View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3219_high_8 (Length: 478)

Name: NF3219_high_8
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3219_high_8
NF3219_high_8
[»] chr2 (1 HSPs)
chr2 (18-470)||(40465813-40466263)
[»] chr4 (2 HSPs)
chr4 (22-108)||(21625299-21625385)
chr4 (337-435)||(21624013-21624111)
[»] chr1 (2 HSPs)
chr1 (19-104)||(28271424-28271509)
chr1 (339-434)||(28271927-28272022)
[»] scaffold0041 (1 HSPs)
scaffold0041 (18-104)||(77216-77302)
[»] chr7 (1 HSPs)
chr7 (18-104)||(40888982-40889068)
[»] chr5 (1 HSPs)
chr5 (167-216)||(38462751-38462800)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 40465813 - 40466263
Alignment:
Q  18 accaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacacctttttatatatcaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40465813 accaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacacctttttatatatcaaa 40465912  T
Q  118 atacaacgaagtttagaactaaacaccatattat-------gtatataggtgaaccaaatacgtcaaatttctttgacccgcttttacttatattttgtt 210  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  40465913 atacaacgaagtttagaactaaacaccatattatatcataggtatataggtgaaacaaatacgtcaaatttctttgactcgcttttacttatattttgtt 40466012  T
Q  211 atagagagtatataaataaattaagcactaaagtacaaagacaaatgaagaagttatgnnnnnnntattgtattattcatgatgataaaataaggaaaat 310  Q
    | ||||||||||||||||||||||||||||||||||||||||       |||||||||       |||||||||||||||||||||||||||||||||||    
T  40466013 acagagagtatataaataaattaagcactaaagtacaaagac-------gaagttatgaaaaaa-tattgtattattcatgatgataaaataaggaaaat 40466104  T
Q  311 gnnnnnnnnnttcaaaagtagtaataattaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaa 410  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40466105 gaaaaaaaa-ttcaaaagtagtaataattaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaa 40466203  T
Q  411 cacacaaattctcttaaactttgataccttcatttccatctctctctccatattcttctc 470  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40466204 cacacaaattctcttaaactttgataccttcatttctatctctctctccatattcttctc 40466263  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 21625385 - 21625299
Alignment:
Q  22 ccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacaccttttta 108  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  21625385 ccatcagaaacagcttgagaaaccaaccccatcaaaccaatgctgcctcctccataaaccaaatcaatatttcttgacaccttttta 21625299  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 337 - 435
Target Start/End: Complemental strand, 21624111 - 21624013
Alignment:
Q  337 attaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttgat 435  Q
    |||||||| || |||||||| |||||||||||||| ||||||||| | ||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  21624111 attaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttgat 21624013  T

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Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 28271424 - 28271509
Alignment:
Q  19 ccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacacctt 104  Q
    |||||||||| ||||||||| |||| ||| ||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  28271424 ccaccatcatgaacagcttgtgaaaccaaacccattagaccaatgcttcctcctccataaactagatcaatatttcttgacacctt 28271509  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 434
Target Start/End: Original strand, 28271927 - 28272022
Alignment:
Q  339 taccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttga 434  Q
    ||||||||| |||||||||||||| |||||||| | ||| ||| |||| || ||||| ||||| |||||||| |||||||  ||||| ||||||||    
T  28271927 taccaattcatttccaagttcaatggcagcatcttgataactacttttcttgccaggactacttccacaaaagacacaaaccctcttgaactttga 28272022  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 77302 - 77216
Alignment:
Q  18 accaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacacctt 104  Q
    ||||||||||| ||||||||||||||  || ||||| | ||||||||| ||||||||||| || || ||||| || ||||| |||||    
T  77302 accaccatcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaacctt 77216  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 40888982 - 40889068
Alignment:
Q  18 accaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacacctt 104  Q
    ||||||||||| ||||||||||||||  || ||||| | ||||||||| ||||||||||| || || ||||| || ||||| |||||    
T  40888982 accaccatcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaacctt 40889068  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 38462800 - 38462751
Alignment:
Q  167 aaatacgtcaaatttctttgacccgcttttacttatattttgttatagag 216  Q
    |||||| |||| |||||||||| ||||||| |||||||||||||| ||||    
T  38462800 aaatacctcaactttctttgactcgcttttgcttatattttgttacagag 38462751  T

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