View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_1 (Length: 800)
Name: NF3219_low_1
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 296 - 782
Target Start/End: Complemental strand, 41504329 - 41503834
Alignment:
| Q |
296 |
caacaacattacatggtgcctcaataatgaagttttgtttagttgataagaaactgacacactcgtaaagttgtagattcaattctcgctatcaatgtaa |
395 |
Q |
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| T |
41504329 |
caacaacattacatggtgcctcaataatgaagttttgtttagttgataagaaactaatacactcgtaaagttgtagattcaattctcgctatcaatgtaa |
41504230 |
T |
|
| Q |
396 |
atgccttttttgatagatgatatataagtatctctgtaaatgttcattgaatgttag-------ccaactctgttgaacttcaagatctcaattcacata |
488 |
Q |
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| T |
41504229 |
aggtctttttcgttagatgatatataagtatctctgtaaatgttcgataaatgttagatctgtcccaactctgttgagcttcaagatctcaattcacata |
41504130 |
T |
|
| Q |
489 |
aactttttcttattnnnnnnnn-tatatatattacatggtgcctcctaggggacgagaacaagaaaacgggtggcaatgtatatgattgcaaactccttg |
587 |
Q |
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|||||||||||||| |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41504129 |
aactttttcttattaaaaaaaaatatatatattacatggtgcctcttaaggcacgagaacaagaaaacgggtggcaatgtatatgattgcaaactgcttg |
41504030 |
T |
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| Q |
588 |
cttaagaaaactcatcttttcaacgatattatagttattgtctgttgatttgtgggcat-ctgaatcccggttcattgatacagtataaaatggtccaat |
686 |
Q |
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| T |
41504029 |
cttaagaaaactcatcttttcaacgatattatagttattgtctgttgatttgtgggcatgctgaatcccggttcattgatacagtataaaatggtccaat |
41503930 |
T |
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| Q |
687 |
gttaaattatgggctacgataggattaattatgtagtatgcagcatgcatacccatctctctatacatttactgcatcatatcattgtgatcatag |
782 |
Q |
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| T |
41503929 |
gttaaattatgggctacgataggattaattatgtagtatgcagcatgcatacccatctctctatacatttactgcatcatatcattgtgatcatag |
41503834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 41504474 - 41504367
Alignment:
| Q |
151 |
atgccgttgtcgttggtacttcatgtatactcgagtatggcagttagttaggaataagaaaaaagacaataaagatagaagttgcttgctccataatctt |
250 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41504474 |
atgccgtggtcgttggtacttcatgtatactcgagtatggcagttagttaggaataagaaaaaagacaataaagatagaagttgcttgctccataatctt |
41504375 |
T |
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| Q |
251 |
aggaaccc |
258 |
Q |
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|||||||| |
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| T |
41504374 |
aggaaccc |
41504367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 41504547 - 41504473
Alignment:
| Q |
6 |
aggagcacagatatgctggtgtaggttagatgattaaatatgctaccagcccctaccacaaatactagtactcat |
80 |
Q |
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| T |
41504547 |
aggagcacagatatgctggtgtaggttagatgattaaatatgctaccagcccctaccacaaatactagtactcat |
41504473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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