View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_11 (Length: 436)
Name: NF3219_low_11
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 10351054 - 10350744
Alignment:
| Q |
18 |
cttagaagtttgttaaaaagataattagatcttgaaatatcttttactaaaataattgttggttggttatttaggtaatggaataatgccacacatcgta |
117 |
Q |
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| T |
10351054 |
cttagaagtttgttaaaaagataattaaatcttgaaatatcttttactaaaataattgttggttggttatttaggtaatggaataatgccacacatcgta |
10350955 |
T |
|
| Q |
118 |
atggttactgttgttaagcaccttacaccagttcttgaaacatagaaagaatccattggaatcaaaatattttccctgcattgtaaactagaacaatttt |
217 |
Q |
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| T |
10350954 |
atggttactgttgttaagcaccttacaccagttcttgagacatagaaagaatccattggaaacaaaatattttccctgcattgtaaactagaacaatttt |
10350855 |
T |
|
| Q |
218 |
gctcgcttaacaaaatcttttaaatgattataaagtttctggtacgattatattttgaagtgaaaaggatgaaataaatatgataagctctctacgttat |
317 |
Q |
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| T |
10350854 |
gctcgcttgacaaaatcttttaaa---------------tggtacgattatattttgaagtgaaaaggatgaaataaatatgataagctctctacgttat |
10350770 |
T |
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| Q |
318 |
ttttgttgataattcattggtgagat |
343 |
Q |
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| T |
10350769 |
ttttgttgataattcattggtgagat |
10350744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 280
Target Start/End: Complemental strand, 10355366 - 10355255
Alignment:
| Q |
156 |
aacatagaaagaatccattggaatcaaaatattttccctgcattgtaaactagaacaattttgctcgcttaacaaaatcttttaaatgattataaagttt |
255 |
Q |
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| T |
10355366 |
aacatagaaagaatccattggaatcaaaatattttccctgcactgtaaactagaactattttg-------------atcttttaaatggttataaagttt |
10355280 |
T |
|
| Q |
256 |
ctggtacgattatattttgaagtga |
280 |
Q |
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|||| |||||||| ||||||||||| |
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| T |
10355279 |
ctggcacgattattttttgaagtga |
10355255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 10350745 - 10350688
Alignment:
| Q |
365 |
attgacataaaactttctttaatttttctcttaaattacatgaggattagccctatta |
422 |
Q |
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| T |
10350745 |
attgacacaaaactttctttaatttttctcttaaattacatgaggattagccctatta |
10350688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 10355548 - 10355476
Alignment:
| Q |
18 |
cttagaagtttgttaaaaagataattagatcttgaaatatcttttactaaaataattg-ttggttggttattt |
89 |
Q |
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| T |
10355548 |
cttagatgtttgttagaaagataattagatctggaaatatctttaactaaaataattgtttggttggttattt |
10355476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 405
Target Start/End: Complemental strand, 10355258 - 10355190
Alignment:
| Q |
337 |
gtgagatcttgatttagtgaaatacaatattgacataaaactttctttaatttttctcttaaattacat |
405 |
Q |
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| T |
10355258 |
gtgaggtcttgatttagtgaaatataatattgccacaaaattttcttttatttttctcttaaactacat |
10355190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 10355462 - 10355414
Alignment:
| Q |
75 |
gttggttggttatttaggtaatggaataatgccacacatcgtaatggtt |
123 |
Q |
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| T |
10355462 |
gttggttggttatttaggtaatggaataatgccacatctcgtaatggtt |
10355414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 10362042 - 10362001
Alignment:
| Q |
330 |
ttcattggtgagatcttgatttagtgaaatacaatattgaca |
371 |
Q |
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||||||||| | ||||||||||||||||||||||||||||| |
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| T |
10362042 |
ttcattggttacgtcttgatttagtgaaatacaatattgaca |
10362001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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