View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3219_low_12 (Length: 436)
Name: NF3219_low_12
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 7954599 - 7954867
Alignment:
| Q |
21 |
aaaacaagcttaatgcatttatttataataatgtgttcaatacatgttggaattttgtaataaatgcggaaaccaatttccaatggagccactggctaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||| ||||| | |||||| |
|
|
| T |
7954599 |
aaaacaagcttaatgcatttatttataataatgtgttcaatatatgttggaattttgtaataaatgcagaaacaagtttccaactgagccgttagctaaa |
7954698 |
T |
|
| Q |
121 |
c-----acaatttcatttgctagtttcatgagaatttataataaaacaaaagtcgatttgtttacttgggtttccatatactttcactctaaaggcaatt |
215 |
Q |
| |
|
| |||| ||||||| || || | |||| | || |||||| | |||| |||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7954699 |
ctatgaacaacttcatttacttgtcttatgaaagttcataatagagcaaa-gtcgatttttttacttgggtttccatatactttcactctaaaagcaatt |
7954797 |
T |
|
| Q |
216 |
aagtaaaattcaactttatatttttcaacaagtgccaaagattttttatcattaacttttctaaaatcac |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7954798 |
aagtaaaattcaactttatatttttcaacaagtgccaaagattttttttcattaacttttctaaaatcac |
7954867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 7954851 - 7954967
Alignment:
| Q |
305 |
aacttttctaaaaatcactgtttatcgatacagtaaattttgattttccctgtgaactcgcgcgtcgaactttctcacccttgcgcgcgaatctgcttct |
404 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7954851 |
aacttttctaaaa-tcactgtttatcgatacagtaaattttgattttcactgtgaactcgcgcgtcgaactttctcacccttgcgcgcgaatctgcttct |
7954949 |
T |
|
| Q |
405 |
gcctgcggtttctctctg |
422 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
7954950 |
gcctgcgggttctctctg |
7954967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 46086681 - 46086754
Alignment:
| Q |
21 |
aaaacaagcttaatgcattt-atttataataatgtgttcaatacatgttggaattttgtaataaatgcggaaac |
93 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||| | ||||||||||| |
|
|
| T |
46086681 |
aaaacaaacttaatgcatttcatttataataatgcgttcaatacatattggaattttgtagtgaatgcggaaac |
46086754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 13592019 - 13592107
Alignment:
| Q |
23 |
aacaagcttaatgcattt-atttataataatgtgttcaatacatgttggaattttgtaataaatgcggaaaccaatttccaatggagcc |
110 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||| ||||||||||| |||||| ||||||| ||| || |||| | ||||||| ||||| |
|
|
| T |
13592019 |
aacaagcttaatgtatttcatttataagaatgttttcaatacatgatggaatgttgtaatgaatacgaaaactagcttccaatagagcc |
13592107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University