View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_17 (Length: 376)
Name: NF3219_low_17
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 6633882 - 6633599
Alignment:
| Q |
1 |
atattgtgttctaaaaaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagctccgaaagggcattgtcagcaca |
100 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6633882 |
atattgtgttccaaagaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagctccgaaagggcattgtcagcaca |
6633783 |
T |
|
| Q |
101 |
taatatatttcccttttgagctttgttgttgttctcttcaacagacctaacaccaccgggtggacttattgcgatttgaaatgttactgttgctatgaat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
6633782 |
taatatatttcccttttgagctttgt---tgttctcttcaacagacctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaat |
6633686 |
T |
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| Q |
201 |
actgctactacactcatatttcctctcatctgtttcaaccattcatccnnnnnnnngtatgacaaccaattcaatgctagttctaaa |
287 |
Q |
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| T |
6633685 |
actgctactacactcatatttcctctcatctgttccaaccattcatccttgtttttgtatgacaaccaattcaatgctagttctaaa |
6633599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 4 - 360
Target Start/End: Complemental strand, 6807894 - 6807538
Alignment:
| Q |
4 |
ttgtgttctaaaaaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagctccgaaagggcattgtcagcacataa |
103 |
Q |
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|||||||| || ||||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||| || ||| || || ||||||||| |
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| T |
6807894 |
ttgtgttccaataaaggaagtcagaatagtgttcagggtatacaacggccaaagcagcttcacccggacatagctccaaacgggtatcgttagcacataa |
6807795 |
T |
|
| Q |
104 |
tatatttcccttttgagctttgttgttgttctcttcaacagacctaacaccaccgggtggacttattgcgatttgaaatgttactgttgctatgaatact |
203 |
Q |
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| T |
6807794 |
tatatttcctttttgagctttgttgtt---ctcttcaacagacctaacaccaccgggtggacttattgccatttaaaatgttaatgttgctatgaatact |
6807698 |
T |
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| Q |
204 |
gctactacactcatatttcctctcatctgtttcaaccattcatccnnnnnnnngtatgacaaccaattcaatgctagttctaaaacctttctccaacctt |
303 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || ||||| || |||||| |||||||||||| |
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| T |
6807697 |
gctactacactcatatttcctctcatctgttccaaccattcatccttgtttttgtatgacaaccaacgcactgctaatttgaaaacccttctccaacctt |
6807598 |
T |
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| Q |
304 |
t-tct--ttcctcacttgttggggtttttgttgaacgaccatgattatccacttgattgt |
360 |
Q |
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| T |
6807597 |
tctcttgtttcttattggttagggtttctgttgaaccaccatgattatccacttgattgt |
6807538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 146 - 360
Target Start/End: Complemental strand, 6835691 - 6835474
Alignment:
| Q |
146 |
cctaacaccaccgggtggacttattgcgatttgaaatgttactgttgctatgaatactgctactacactcatatttcctctcatctgtttcaaccattca |
245 |
Q |
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|||||| |||||||||||| |||| || |||||||| |||| |||||||||||||| |||||||| ||||||||| || ||||| || | ||||||| || |
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| T |
6835691 |
cctaacgccaccgggtggatttatagccatttgaaacgttattgttgctatgaatattgctactatactcatattccccctcatttgatccaaccatgca |
6835592 |
T |
|
| Q |
246 |
tccnnnnnnnngtatgacaaccaattcaatgctagttctaaaacctttctccaacct---tttctttcctcacttgttggggtttttgttgaacgaccat |
342 |
Q |
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| | ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||| |
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| T |
6835591 |
ttcttgttttggtatgacaaccaattcactgctagttctaaaacctttctccaacctttctttggttcctcactcgatggggtttttgttgaacgaccat |
6835492 |
T |
|
| Q |
343 |
gattatccacttgattgt |
360 |
Q |
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| T |
6835491 |
cattatccacttgattgt |
6835474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 360
Target Start/End: Complemental strand, 6632505 - 6632316
Alignment:
| Q |
174 |
atttgaaatgttactgttgctatgaatactgctactacactcatatttcctctcatctgtttcaaccattcatccnnnnnnnngtatgacaaccaattca |
273 |
Q |
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||||||||||||| |||||||||||||| |||||||||||| | ||| |||||||||| || |||||| |||| | ||||||||||||| || |
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| T |
6632505 |
atttgaaatgttattgttgctatgaatattgctactacactaaaattccctctcatcttttccaaccagtcattcttgtttttgtatgacaaccaacgca |
6632406 |
T |
|
| Q |
274 |
atgctagttctaaaacctttctccaaccttt-tct--ttcctcacttgttggggtttttgttgaacgaccatgattatccacttgattgt |
360 |
Q |
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||||| || |||||| ||||||||||||| ||| || || | | ||| |||||| |||||||| ||||||||||||||||||||||| |
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| T |
6632405 |
ctgctaatttgaaaacccttctccaacctttctcttgtttcttattggttagggtttctgttgaaccaccatgattatccacttgattgt |
6632316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6835836 - 6835759
Alignment:
| Q |
1 |
atattgtgttctaaaaaaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagct |
78 |
Q |
| |
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||||||||||| |||||||||||||| ||||||| |||||||||||||||| || |||| | ||||||||||||| |
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| T |
6835836 |
atattgtgttccaaaaaaggaagtcagcatagtcatcagggtatacaatggctaagacagcattacccggacatagct |
6835759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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