View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_22 (Length: 350)
Name: NF3219_low_22
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 127 - 341
Target Start/End: Original strand, 31495608 - 31495822
Alignment:
| Q |
127 |
ttcgatgaaatgccaactagttactatgcaaattgaatgaaatcctcaacttgagcacctgggattttgcttgtctttgagttgattgataaatgcaaag |
226 |
Q |
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| T |
31495608 |
ttcgatgaaatgccaactagttactatgcaaattgaatgaaatcctcaacttgagcacctgggattttgcttgtctttgagttgattgataaatgcaaag |
31495707 |
T |
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| Q |
227 |
ttaggattgattggcacatttttcactctagattttgtacgtagttttagcaattaaagtttacaaatgttggtacatatacaaggatgtatatattcaa |
326 |
Q |
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| T |
31495708 |
ttaggattgattggcacatttttcactctagattttgtacgtagttttagcaattaaagtttacaaatgttggtacatatacaaggatgtatatattcaa |
31495807 |
T |
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| Q |
327 |
aatcttgacctatgc |
341 |
Q |
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| T |
31495808 |
aatcttgacctatgc |
31495822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 31495502 - 31495554
Alignment:
| Q |
17 |
agttccaagtccacatgccactccataaatataagtatttatattttctaaag |
69 |
Q |
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| T |
31495502 |
agttccaagtccacatgccactccataaatataagtatttatattttctaaag |
31495554 |
T |
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