View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3219_low_23 (Length: 349)

Name: NF3219_low_23
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3219_low_23
NF3219_low_23
[»] chr8 (1 HSPs)
chr8 (8-333)||(31734772-31735097)
[»] chr1 (5 HSPs)
chr1 (171-318)||(6768700-6768844)
chr1 (8-91)||(6768955-6769037)
chr1 (45-84)||(50004260-50004299)
chr1 (10-84)||(30210197-30210270)
chr1 (8-36)||(9381923-9381951)
[»] chr2 (5 HSPs)
chr2 (171-316)||(6458027-6458169)
chr2 (8-91)||(6458280-6458362)
chr2 (13-82)||(40053820-40053888)
chr2 (46-84)||(18666071-18666109)
chr2 (8-88)||(12027364-12027443)
[»] chr4 (6 HSPs)
chr4 (171-316)||(2183737-2183879)
chr4 (171-333)||(45413273-45413424)
chr4 (8-91)||(2183990-2184072)
chr4 (8-91)||(45413080-45413162)
chr4 (13-84)||(35075167-35075237)
chr4 (12-84)||(34667134-34667206)
[»] chr5 (1 HSPs)
chr5 (12-83)||(7010112-7010182)
[»] chr3 (1 HSPs)
chr3 (8-90)||(40417654-40417735)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 31735097 - 31734772
Alignment:
Q  8 gaagatggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgataaaaaatagta-----acaga---- 98  Q
    |||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||||||||||| | || ||     ||| |        
T  31735097 gaagatggataaggatatgatatgatagttacatca-taacacttatcctatcacatgtttggtgcatacatgataaatactaataggaaaacatagttt 31734999  T
Q  99 -tttttaatgtgtttggtaagccaaacaaaaactaaaattaagaaacgtataaaaaactccaatggcagcacgttcgcaaatccatgccacaaaggtacc 197  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31734998 ttttttaatgtgtttggtaagccaaacaaaaactaaaattaagaaacgtataaaaaactccaatggcagcacgttcgcaaatccatgccacaaaggtacc 31734899  T
Q  198 aagaacaataaaaagcaaactgatgccactaatgattccaataattgatgaaaacatccttttattcttcgattcacaaaataaagttacaaattttgtt 297  Q
    ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31734898 aagaacaataaaaa---------tgccactaatgattccaataattgatgaaaacatccttttattcttcgattcacaaaataaagttacaaattttgtt 31734808  T
Q  298 ttgcaattgtactagaaaagagcataatccaataat 333  Q
    ||||||||||||||||||||||||||||||||||||    
T  31734807 ttgcaattgtactagaaaagagcataatccaataat 31734772  T

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Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 6768844 - 6768700
Alignment:
Q  171 ttcgcaaatccatgccacaaaggtaccaagaacaataaaaagcaaactgatgccactaatgattccaataattgatgaaaacatccttttattcttcgat 270  Q
    ||||||||||| ||||||||||||||||| |||| | |||||||||| ||||||||||||   | ||||||||| ||||||| ||||||||||| |||||    
T  6768844 ttcgcaaatccctgccacaaaggtaccaataacattcaaaagcaaaccgatgccactaat---ttcaataattggtgaaaacgtccttttattcatcgat 6768748  T
Q  271 tcacaaaataaagttacaaattttgttttgcaattgtactagaaaaga 318  Q
    ||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  6768747 tcataaaataaagttaaaaattttgttttgcaattgtaccagaaaaga 6768700  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 6769037 - 6768955
Alignment:
Q  8 gaagatggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgataaaaaatag 91  Q
    |||||||||||| |||||||||||||||| |||| | |||| ||||||||||||||||||||||||| |||||||||| |||||    
T  6769037 gaagatggataaagatatgatatgatagtgacttga-taacgtttatcctatcacatgtttggtgcacacatgataaacaatag 6768955  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 50004260 - 50004299
Alignment:
Q  45 taacatttatcctatcacatgtttggtgcatacatgataa 84  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  50004260 taacatttatcctatcatatgtttggtgcacacatgataa 50004299  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 30210270 - 30210197
Alignment:
Q  10 agatggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgataa 84  Q
    |||||||||| |||||||||||||| | || | | |||||||||||||||||| |||||| | || |||||||||    
T  30210270 agatggataaagatatgatatgataatgacatga-taacatttatcctatcacttgtttgatacacacatgataa 30210197  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 9381923 - 9381951
Alignment:
Q  8 gaagatggataaggatatgatatgatagt 36  Q
    |||||||||||||||||||||||||||||    
T  9381923 gaagatggataaggatatgatatgatagt 9381951  T

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Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 171 - 316
Target Start/End: Complemental strand, 6458169 - 6458027
Alignment:
Q  171 ttcgcaaatccatgccacaaaggtaccaagaacaataaaaagcaaactgatgccactaatgattccaataattgatgaaaacatccttttattcttcgat 270  Q
    |||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||||   | ||||||||| ||||||| ||||||||||| |||||    
T  6458169 ttcgcaaatccatgccgcaaaggtaccaataacattcaaaagcaaactgatgccactaat---ttcaataattggtgaaaacgtccttttattcatcgat 6458073  T
Q  271 tcacaaaataaagttacaaattttgttttgcaattgtactagaaaa 316  Q
    ||| |||||||||||| || ||||||||||||||||||| ||||||    
T  6458072 tcataaaataaagttaaaatttttgttttgcaattgtaccagaaaa 6458027  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 6458362 - 6458280
Alignment:
Q  8 gaagatggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgataaaaaatag 91  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||| |||||||||| |||||    
T  6458362 gaagatggataaggatatgatatgataatgacttta-taacatttatcctatcacatgtttggtgcacacatgataaataatag 6458280  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 40053820 - 40053888
Alignment:
Q  13 tggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgat 82  Q
    |||||||||||||||||||||||  ||   | ||||| |||||||||||||||||||||||| |||||||    
T  40053820 tggataaggatatgatatgatagcaacaaga-taacaattatcctatcacatgtttggtgcacacatgat 40053888  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 18666109 - 18666071
Alignment:
Q  46 aacatttatcctatcacatgtttggtgcatacatgataa 84  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  18666109 aacatttatcctatcacatgtttgatgcacacatgataa 18666071  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 12027443 - 12027364
Alignment:
Q  8 gaagatggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgataaaaaa 88  Q
    |||| |||||||||||||||||||||||| | | || ||||||||||| | |||  ||||| | ||| |||||||||||||    
T  12027443 gaagctggataaggatatgatatgatagtga-tataataacatttatcatgtcatgtgttttgggcacacatgataaaaaa 12027364  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 171 - 316
Target Start/End: Complemental strand, 2183879 - 2183737
Alignment:
Q  171 ttcgcaaatccatgccacaaaggtaccaagaacaataaaaagcaaactgatgccactaatgattccaataattgatgaaaacatccttttattcttcgat 270  Q
    |||||||||||||||||||||||||| || |||| | |||||||||| ||||| ||||||   | ||||||||| ||||||| ||||||||||| | |||    
T  2183879 ttcgcaaatccatgccacaaaggtacaaataacattcaaaagcaaaccgatgctactaat---ttcaataattggtgaaaacgtccttttattcattgat 2183783  T
Q  271 tcacaaaataaagttacaaattttgttttgcaattgtactagaaaa 316  Q
    ||| |||||||||||| || ||||||||||||||||||| ||||||    
T  2183782 tcataaaataaagttaaaatttttgttttgcaattgtaccagaaaa 2183737  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 333
Target Start/End: Original strand, 45413273 - 45413424
Alignment:
Q  171 ttcgcaaatccatgccacaaaggtaccaagaacaataaaaagcaaactgatgccactaatgattccaataattgatgaaaacatccttttattcttcgat 270  Q
    ||||||||||||||||||||||||||||| |||| | |||||||||| ||||||||||   ||| ||||||||| |||         |||||||  ||||    
T  45413273 ttcgcaaatccatgccacaaaggtaccaataacattcaaaagcaaaccgatgccacta---atttcaataattggtga---------tttattcaccgat 45413360  T
Q  271 tcacaaaataaagtt-acaaattttgttttgcaattgtactagaaaagagcataatccaataat 333  Q
    ||||||||||||||| | |||  ||||||||||||||||| ||||||| |||||||||||||||    
T  45413361 tcacaaaataaagttaaaaaaaattgttttgcaattgtaccagaaaagggcataatccaataat 45413424  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 2184072 - 2183990
Alignment:
Q  8 gaagatggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgataaaaaatag 91  Q
    ||||||||||||||||||||||||||| | || ||| ||||||||||| |||||||||||||||||| |||||||||| |||||    
T  2184072 gaagatggataaggatatgatatgataatgacctta-taacatttatcttatcacatgtttggtgcacacatgataaataatag 2183990  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 45413080 - 45413162
Alignment:
Q  8 gaagatggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgataaaaaatag 91  Q
    |||||||||||| ||||| |||||||||| || | | ||||||||||| ||||| ||||||| |||| |||||||||| |||||    
T  45413080 gaagatggataaagatataatatgatagtgacctga-taacatttatcttatcatatgtttgatgcacacatgataaataatag 45413162  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 35075237 - 35075167
Alignment:
Q  13 tggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgataa 84  Q
    ||||||| |||| ||||||||||| || | | ||||||||||||||| ||||||||||| || |||||||||    
T  35075237 tggataatgataggatatgatagtgacataa-taacatttatcctattacatgtttggtacacacatgataa 35075167  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 34667206 - 34667134
Alignment:
Q  12 atggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgataa 84  Q
    |||||||| |||| ||||||||||| || | |  || ||||||||| ||| |||||||||||| |||||||||    
T  34667206 atggataaagataggatatgatagtgacatgataaatatttatcctctcatatgtttggtgcaaacatgataa 34667134  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 7010112 - 7010182
Alignment:
Q  12 atggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgata 83  Q
    |||||||||||||  |||||||||| || | | |||||||||||||||||| ||||||||||| ||||||||    
T  7010112 atggataaggatagaatatgatagtgacatga-taacatttatcctatcacctgtttggtgcacacatgata 7010182  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 40417735 - 40417654
Alignment:
Q  8 gaagatggataaggatatgatatgatagttactttagtaacatttatcctatcacatgtttggtgcatacatgataaaaaata 90  Q
    |||| |||||||||||| ||||||| ||| || | | ||||||||||| ||||| ||||||||||||  |||||||| |||||    
T  40417735 gaagctggataaggataggatatgacagtgacatga-taacatttatcatatcatatgtttggtgcacgcatgataagaaata 40417654  T

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