View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_24 (Length: 330)
Name: NF3219_low_24
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_24 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 67 - 330
Target Start/End: Complemental strand, 21099765 - 21099502
Alignment:
| Q |
67 |
ggggacaaaaaagaggggccaagatatgaagatggttgaaactattgtaaacaaaccagatgtggtgttggatgtccaacaccacctacaacaatgaaaa |
166 |
Q |
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| T |
21099765 |
ggggacaaaaaagaggggccaagatatgaagatggttgaaactattgtaaacaaaccagatgtggtgttggatgttcaacaccacctacaacaatgaaaa |
21099666 |
T |
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| Q |
167 |
tcattagttggaactgtttagggttaggtaacccgaaggcagttcgagccttactaaggcttctcagagttaaaaatcctcaactggttttcttaatgga |
266 |
Q |
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| T |
21099665 |
tcatcagttggaactgtttagggttaggtaacccgaaggcagttcgagccttactaaggcttttcagagttaaaaatcctcaactggttttcttaatgga |
21099566 |
T |
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| Q |
267 |
aactagattgaaagttgatgagattgagcggattagaataacgtgtgacttcagttcttgtatc |
330 |
Q |
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| T |
21099565 |
aactagattgaaagttgatgagattgagtggattagaataacgtgtgacttcagttcttgtatc |
21099502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 21099891 - 21099834
Alignment:
| Q |
10 |
atggacaaggcagggtgatagatgtaagaagagtatgtctaaagggagaaaactagag |
67 |
Q |
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| T |
21099891 |
atggacaaggcagggtgatagatgtaagaagagtatgtctaaagggagaaaactagag |
21099834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 275
Target Start/End: Complemental strand, 8371125 - 8370969
Alignment:
| Q |
119 |
aaaccagatgtggtgttggatgtccaacaccacctacaacaatgaaaatcattagttggaactgtttagggttaggtaacccgaaggcagttcgagcctt |
218 |
Q |
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| T |
8371125 |
aaaccagagggggtgttggatgaccaacacctcctaccccaatgaaactcttaagttggaattgtagggggttggggaaccctcgggcaattcgagcctt |
8371026 |
T |
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| Q |
219 |
actaaggcttctcagagttaaaaatcctcaactggttttcttaatggaaactagatt |
275 |
Q |
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| T |
8371025 |
gttaaggctcatccgtatccaaaatcctcaagtagttttcttaatggaaactagatt |
8370969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 20394496 - 20394443
Alignment:
| Q |
130 |
ggtgttggatgtccaacaccacctacaacaatgaaaatcattagttggaactgt |
183 |
Q |
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| T |
20394496 |
ggtgttggatgaccaacaccgcctagaccaatgaaaatcataagttggaactgt |
20394443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 29941670 - 29941769
Alignment:
| Q |
128 |
gtggtgttggatgtccaacaccacctacaacaatgaaaatcattagttggaactgtttagggttaggtaacccgaaggcagttcgagccttactaaggct |
227 |
Q |
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| T |
29941670 |
gtggtgttggatgaccaacaccgccaagaaccatgaaaatcctaagttggaactgtcgggggttagggagtccccaggcagttcgagccttgttaaggct |
29941769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 15701541 - 15701647
Alignment:
| Q |
121 |
accagatgtggtgttggatgtccaacaccacctacaacaatgaaaatcattagttggaactgtttagggttaggtaacccgaaggcagttcgagccttac |
220 |
Q |
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| T |
15701541 |
accagagggggtgttggatgaccaacacctcctatcccaatgaaaatcctaagttggaactgcagagggttggggaaccctcgggcagttcgagccttgt |
15701640 |
T |
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| Q |
221 |
taaggct |
227 |
Q |
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| T |
15701641 |
taaggct |
15701647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 275
Target Start/End: Complemental strand, 204599 - 204454
Alignment:
| Q |
130 |
ggtgttggatgtccaacaccacctacaacaatgaaaatcattagttggaactgtttagggttaggtaacccgaaggcagttcgagccttactaaggcttc |
229 |
Q |
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| T |
204599 |
ggtgttggatgaccaacacctcctaccccaatgaaactcttaagttggaattgcagggggttggggaaccctcaggcaatttgagccttgttaaggctta |
204500 |
T |
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| Q |
230 |
tcagagttaaaaatcctcaactggttttcttaatggaaactagatt |
275 |
Q |
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| T |
204499 |
accgtatccaaaatcctcaagtagttttcttaatggaaactagatt |
204454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 275
Target Start/End: Complemental strand, 210676 - 210531
Alignment:
| Q |
130 |
ggtgttggatgtccaacaccacctacaacaatgaaaatcattagttggaactgtttagggttaggtaacccgaaggcagttcgagccttactaaggcttc |
229 |
Q |
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| T |
210676 |
ggtgttggatgaccaacacctcctaccccaatgaaactcttaagttggaattgcagggggttggggaaccctcaggcaatttgagccttgttaaggctta |
210577 |
T |
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| Q |
230 |
tcagagttaaaaatcctcaactggttttcttaatggaaactagatt |
275 |
Q |
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| T |
210576 |
accgtatccaaaatcctcaagtagttttcttaatggaaactagatt |
210531 |
T |
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