View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_32 (Length: 293)
Name: NF3219_low_32
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 4331469 - 4331201
Alignment:
| Q |
17 |
atatcatctgcaaagttgacaagtaattgcaatttgcttcctgtaacagttttcttcagatcacttattgatactaaaaactggtcaagtaatgacaatg |
116 |
Q |
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| T |
4331469 |
atatcatctgcaaagttgacaagtagttgcaatttgcttcctgcaacagttttcttcacatcacttattgatactaaaaattggtcaagtaatgataatg |
4331370 |
T |
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| Q |
117 |
tct---tcatgtcatcaggaggaaaataggtggctgtttttcctttgattcatgaaaacaggagagaaagtgaaggccaagtatcgtaccggtcgtccat |
213 |
Q |
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| T |
4331369 |
tctaactcatgtcatcaggaggaaaatagctggctgtttttcctttgattcatgaaaacaggagagaaagtgaaggccaagtatcgtaccggtagtccat |
4331270 |
T |
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| Q |
214 |
aaattcgtctagataaacagtttaatcacgcgcttataacataattgtttatcatataggtgctttcat |
282 |
Q |
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| T |
4331269 |
aaactcgtctagataaacagtttaatcacgcgcttataacataattgtttatcatataagtgctttcat |
4331201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 4325861 - 4325692
Alignment:
| Q |
53 |
cttcctgtaacagttttcttcagatcacttattgatactaaaaactggtcaagtaatgacaatgtcttcatgtcatcaggaggaaaataggtggctgttt |
152 |
Q |
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| T |
4325861 |
cttcctgcaacagttttcttcacagctccaactgagaccaaaaactcgtcaagagatgataaggttctcatgtcatcgggaggaaagtaactggctgctt |
4325762 |
T |
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| Q |
153 |
ttcctttgattcatgaaaacaggagagaaagtgaaggccaagtatcgtaccggtcgtccataaattcgtc |
222 |
Q |
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| T |
4325761 |
ttcctttgatcgatgaaaacagaagggaaagtgaaggccaagcatcataccggtcatccaaaaactcgtc |
4325692 |
T |
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