View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_33 (Length: 287)
Name: NF3219_low_33
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 6862653 - 6862392
Alignment:
| Q |
16 |
caataattatgaatcttgcaatgaacatttagaggtttcaaaatggcaacgtatgtcaatctggcacactaatatttaagtgcagcatactatataatag |
115 |
Q |
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| T |
6862653 |
caataattatgaatcttgcaatgaacatttagaggtttcaaaatggcaacgtatatcaatctggcacactaatatttaagtgcagcatactatataatag |
6862554 |
T |
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| Q |
116 |
tatcaatttaaagagagaaaattataagcaaatgtgctaatgacaccacataaacaaccattatctcctttactttacagtcacaagtctgtttttaatg |
215 |
Q |
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| T |
6862553 |
tatcaatttaaagagagaaaattataagcaaatgtgctaatgacaccacataaacaaccattatctcctttactttacagtcacaagtctgtttttaatg |
6862454 |
T |
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| Q |
216 |
tgataccaagcgtcggcatatcctaaggtatatatttcaacccaaaatcaaacccttctctg |
277 |
Q |
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| T |
6862453 |
taataccaagcgtcggcatatcctaaggtacatatttcaacccaaaatcaaacccttctctg |
6862392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 6857605 - 6857503
Alignment:
| Q |
139 |
ataagcaaatgtgctaatgacaccacataaacaaccattatctcctttactttacagtcacaagtctgtttt-taatgtgataccaagcgtcggcatatc |
237 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||| || | ||||||| ||||| | |||||||| |||||||||||||| ||||||| |||| |
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| T |
6857605 |
ataagcaaatgtgctaatgacaccacataaaaaactattatcaccatcactttaccgtcactaatctgttttctaatgtgataccaaccgtcggcgtatc |
6857506 |
T |
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| Q |
238 |
cta |
240 |
Q |
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||| |
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| T |
6857505 |
cta |
6857503 |
T |
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