View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_36 (Length: 276)
Name: NF3219_low_36
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 45232985 - 45232731
Alignment:
| Q |
7 |
ggagcagagagtttccattatcatcatgtggccattcagcaagaaaggaatttctggattctcagggagttcaactgctgaacaagtcactcatggaatt |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45232985 |
ggagaagagagtttccattatcatcatgtggccattcagcaagaaaggaatttctggtttctcagggagttcaactgctgaacaagtcactcatggaatt |
45232886 |
T |
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| Q |
107 |
gatgcaattggcctcactgctattgttactggtctatcttctattactctttcttaccannnnnnnnnnnnnnnnnnnnncaagcatgccctttgttgaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45232885 |
gatgcaattggcctcactgctattgttactggtctatcttctattactctttcttaccatttttttaacttttcatttttcaagcatgccctttgttgaa |
45232786 |
T |
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| Q |
207 |
tagtagttttatgttgccgagttattgggaattattagcctgtatgtatgtatat |
261 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45232785 |
tagtagttttatgttgcagagttattgggaattattagcctgtatgtatgtatat |
45232731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 45249155 - 45249016
Alignment:
| Q |
26 |
atcatcatgtggccattcagcaagaaaggaatttctggattctcagggagttcaactgctgaacaagtcactcatggaattgatgcaattggcctcactg |
125 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||| ||||||| |
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| T |
45249155 |
atcatcatgtggccattcagcaagaaaggggtttctggattctcagggaattcaactgctgaaaaagttactcatggaattgatgcatctggactcactg |
45249056 |
T |
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| Q |
126 |
ctattgttactggtctatcttctattactctttcttacca |
165 |
Q |
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| T |
45249055 |
ctattgtcaccggtctatcttctatcactctttcctacca |
45249016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 45214250 - 45214110
Alignment:
| Q |
23 |
attatcatcatgtggccattcagcaagaaaggaatttctggattctcagggagttcaactgctgaacaagtcactcatggaattgatgcaattggcctca |
122 |
Q |
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| T |
45214250 |
attatcatcatgtggccattcagcaggaaaggggtatctgggttttcatggaagtcaactgctgaagaagttactcatggaattgatgcaactggcctca |
45214151 |
T |
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| Q |
123 |
ctgctattgttactggtctatcttctattactctttcttac |
163 |
Q |
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|||||||||| |||||| ||||||| ||||||||||||| |
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| T |
45214150 |
ctgctattgtcactggtgattcttctactactctttcttac |
45214110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 45207819 - 45207712
Alignment:
| Q |
32 |
atgtggccattcagcaagaaaggaatttctggattctcagggagttcaactgctgaacaagtcactcatggaattgatgcaattggcctcactgctattg |
131 |
Q |
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||||||||||||||||||||||| ||||||| || ||| ||| |||||||||||||||||||| |||||||| ||||| | ||| |||||||| |||| |
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| T |
45207819 |
atgtggccattcagcaagaaaggtgtttctggtttttcatggaactcaactgctgaacaagtcacacatggaatcgatgctactggtctcactgccattg |
45207720 |
T |
|
| Q |
132 |
ttactggt |
139 |
Q |
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|||||||| |
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| T |
45207719 |
ttactggt |
45207712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 45234515 - 45234450
Alignment:
| Q |
72 |
ggagttcaactgctgaacaagtcactcatggaattgatgcaattggcctcactgctattgttactg |
137 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||| || ||||||||| ||||| |||| |
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| T |
45234515 |
ggagatcaaccgctgaacaagtcactcatggaattgatgcaactgacctcactgccattgtcactg |
45234450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 45248994 - 45248952
Alignment:
| Q |
187 |
caagcatgccctttgttgaatagtagttttatgttgccgagtt |
229 |
Q |
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| T |
45248994 |
caagcatgccctttgttgaatagtagttttatgttgcagagtt |
45248952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 41049401 - 41049434
Alignment:
| Q |
77 |
tcaactgctgaacaagtcactcatggaattgatg |
110 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
41049401 |
tcaactgctcaacaagtcactcatggaattgatg |
41049434 |
T |
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