View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3219_low_40 (Length: 250)

Name: NF3219_low_40
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3219_low_40
NF3219_low_40
[»] chr1 (18 HSPs)
chr1 (7-174)||(36725267-36725433)
chr1 (7-174)||(33380298-33380464)
chr1 (7-174)||(12906701-12906867)
chr1 (12-155)||(24159203-24159345)
chr1 (14-120)||(19309033-19309138)
chr1 (7-160)||(2493205-2493357)
chr1 (7-160)||(23191405-23191557)
chr1 (7-174)||(28857430-28857596)
chr1 (16-174)||(32987782-32987938)
chr1 (7-159)||(27761229-27761376)
chr1 (7-153)||(31064515-31064660)
chr1 (39-92)||(9252899-9252952)
chr1 (13-120)||(25661279-25661385)
chr1 (105-163)||(19308952-19309010)
chr1 (7-55)||(2416198-2416245)
chr1 (38-70)||(9352784-9352816)
chr1 (7-55)||(15473361-15473408)
chr1 (7-55)||(47108896-47108943)
[»] chr4 (16 HSPs)
chr4 (7-174)||(33722277-33722444)
chr4 (7-174)||(55081071-55081237)
chr4 (7-160)||(16595352-16595504)
chr4 (7-159)||(20513666-20513817)
chr4 (53-160)||(7216611-7216718)
chr4 (7-160)||(2574721-2574873)
chr4 (7-151)||(39991319-39991466)
chr4 (4-162)||(40684244-40684401)
chr4 (7-55)||(3381936-3381983)
chr4 (7-55)||(8658017-8658064)
chr4 (69-173)||(10566765-10566869)
chr4 (7-67)||(12613710-12613769)
chr4 (7-55)||(19737505-19737552)
chr4 (7-55)||(20548898-20548945)
chr4 (7-55)||(39744922-39744969)
chr4 (7-55)||(50188312-50188359)
[»] chr7 (3 HSPs)
chr7 (7-174)||(6897771-6897937)
chr7 (7-88)||(29477713-29477793)
chr7 (6-104)||(25831792-25831889)
[»] chr6 (12 HSPs)
chr6 (7-161)||(14042203-14042361)
chr6 (12-160)||(32814454-32814601)
chr6 (7-137)||(35130185-35130314)
chr6 (12-103)||(29610419-29610511)
chr6 (38-139)||(14776132-14776233)
chr6 (7-55)||(3917087-3917134)
chr6 (7-55)||(10984570-10984617)
chr6 (7-55)||(19714208-19714255)
chr6 (7-55)||(19899476-19899523)
chr6 (7-55)||(20458961-20459008)
chr6 (7-55)||(22232104-22232151)
chr6 (7-55)||(25506025-25506072)
[»] chr2 (12 HSPs)
chr2 (12-160)||(14105148-14105295)
chr2 (6-159)||(13059867-13060018)
chr2 (7-148)||(44956943-44957083)
chr2 (7-55)||(5870603-5870650)
chr2 (7-55)||(5873745-5873792)
chr2 (7-55)||(15944040-15944087)
chr2 (7-55)||(15952555-15952602)
chr2 (7-55)||(18500748-18500795)
chr2 (7-55)||(35139129-35139176)
chr2 (7-55)||(35147465-35147512)
chr2 (7-55)||(42565431-42565478)
chr2 (7-55)||(42574055-42574102)
[»] chr8 (12 HSPs)
chr8 (7-160)||(19950378-19950530)
chr8 (7-155)||(2470536-2470683)
chr8 (7-160)||(19954832-19954984)
chr8 (12-163)||(7146380-7146532)
chr8 (7-148)||(30779410-30779545)
chr8 (7-148)||(21640558-21640696)
chr8 (7-159)||(4543681-4543830)
chr8 (7-55)||(32000288-32000335)
chr8 (7-55)||(32007257-32007304)
chr8 (7-55)||(32025146-32025193)
chr8 (7-55)||(39837065-39837112)
chr8 (7-55)||(39845107-39845154)
[»] chr3 (18 HSPs)
chr3 (7-137)||(48431709-48431838)
chr3 (7-163)||(16983521-16983676)
chr3 (7-137)||(48435293-48435422)
chr3 (16-155)||(4662733-4662871)
chr3 (6-55)||(16815348-16815396)
chr3 (6-55)||(17934592-17934640)
chr3 (7-55)||(68673-68720)
chr3 (7-55)||(74766-74813)
chr3 (7-55)||(8606680-8606727)
chr3 (7-55)||(9524913-9524960)
chr3 (7-55)||(13105137-13105184)
chr3 (7-55)||(13111294-13111341)
chr3 (7-55)||(14887526-14887573)
chr3 (7-55)||(21638056-21638103)
chr3 (7-55)||(23287625-23287672)
chr3 (7-55)||(26386205-26386252)
chr3 (7-55)||(37468546-37468593)
chr3 (7-55)||(48060227-48060274)
[»] scaffold0018 (1 HSPs)
scaffold0018 (7-160)||(171098-171250)
[»] chr5 (16 HSPs)
chr5 (18-159)||(18264891-18265029)
chr5 (7-163)||(15591152-15591307)
chr5 (13-68)||(16747704-16747759)
chr5 (7-55)||(20639357-20639404)
chr5 (7-55)||(24956332-24956379)
chr5 (7-55)||(24964792-24964839)
chr5 (7-55)||(25041761-25041808)
chr5 (7-55)||(25526707-25526754)
chr5 (7-55)||(25533389-25533436)
chr5 (7-55)||(28844456-28844503)
chr5 (7-55)||(28853066-28853113)
chr5 (7-55)||(30249841-30249888)
chr5 (7-55)||(36448771-36448818)
chr5 (7-55)||(36455155-36455202)
chr5 (7-55)||(37048884-37048931)
chr5 (7-55)||(40015418-40015465)
[»] scaffold0009 (1 HSPs)
scaffold0009 (7-68)||(163863-163923)
[»] scaffold0586 (1 HSPs)
scaffold0586 (7-101)||(5228-5321)
[»] scaffold0119 (1 HSPs)
scaffold0119 (7-55)||(39710-39757)
[»] scaffold0085 (1 HSPs)
scaffold0085 (7-55)||(18242-18289)
[»] scaffold0039 (1 HSPs)
scaffold0039 (7-55)||(89365-89412)
[»] scaffold0031 (1 HSPs)
scaffold0031 (7-55)||(33218-33265)
[»] scaffold0027 (1 HSPs)
scaffold0027 (7-55)||(24110-24157)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 36725267 - 36725433
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36725267 ggagaagagagaaaagttatttgacaactcaaa-agaacttttggtgtgagtagaagtgagggaggggagctcaatttataggtgaagagccaaagataa 36725365  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctcagatcataaat 174  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||  |||||||||    
T  36725366 gttacaaatccaatggctaggattaattgaccgttagaaaatcaatggcttgatctcgcatcataaat 36725433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 33380464 - 33380298
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  33380464 ggagcagagagaaaagttctttgacaactcaaa-agaacttttggtgtgagtagaagtgggggagaagagctcaatttataggtgaagagccaaagataa 33380366  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctcagatcataaat 174  Q
    ||||||||| ||||  |||||||||||| |||||||||||||||||| |||||||||| |||||||||    
T  33380365 gttacaaattcaatgactaggattagttcaccgttagaaaatcaatggcttgatctcacatcataaat 33380298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 12906701 - 12906867
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||| ||||||||| |||||||||| || || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12906701 ggagaagatagaaaagttctttgacaactcaa-gataacttttggtttgagtagaagtgagggagaggagctcaatttataggtgaagagtcaaagataa 12906799  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctcagatcataaat 174  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| ||| |||| | |||||||||    
T  12906800 gttacaaatccaatggttaggattagttgaccgttagaaaatcaatggctttatcttacatcataaat 12906867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 24159345 - 24159203
Alignment:
Q  12 agagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttac 111  Q
    |||||||||||| ||||||||||| || |||||||||||| |||||||||| || |||||| |||||  |||||||||||||||| ||||||| |||||     
T  24159345 agagagaaaagtcatttgacaactcaa-gagaacttttggggtgagtagaaatgtgggagaagagctttatttataggtgaagagtcaaagatgagttat 24159247  T
Q  112 aaatccaatagctaggattagttgaccgttagaaaatcaatgac 155  Q
    ||||||||| |||||||||||||||||  || ||||||||||||    
T  24159246 aaatccaatggctaggattagttgacctctacaaaatcaatgac 24159203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 19309138 - 19309033
Alignment:
Q  14 agagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttacaa 113  Q
    ||||||||||| ||| |||||| || |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19309138 agagaaaagttctttaacaactcaa-gagaacttttggggtaagtagaagtgagggagaggagctcaatttataggtgaagaaccaaagataagttacaa 19309040  T
Q  114 atccaat 120  Q
    || ||||    
T  19309039 attcaat 19309033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 2493357 - 2493205
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| |||||||||| ||| ||||||||||||||||  |||||||||| |   |||||| |||||||||||| |||||||||||||    
T  2493357 ggagaagagagaaaagttttttgacaactcaaa-agaacttttggtgtgatcagaagtgaggaatgagagctctatttataggtgaggagccaaagataa 2493259  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgat 160  Q
    ||||||||| |||| | |||||||||||| ||   | |||||||||||| ||||    
T  2493258 gttacaaattcaatggttaggattagttggccaccacaaaatcaatgacatgat 2493205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 23191557 - 23191405
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||| ||| |||||||||| ||| ||| ||||||| ||||| |||||||||| |   |||||| |||||||||||| ||| |||||||||    
T  23191557 ggagaagagagaaatgttctttgacaactcaaa-agatcttttggggtgagaagaagtgaggaaagagagctctatttataggtgaggagtcaaagataa 23191459  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgat 160  Q
    |||||||||||||| | |||||||||||||||   | |||||||||||| ||||    
T  23191458 gttacaaatccaatggttaggattagttgaccaccacaaaatcaatgacatgat 23191405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 28857596 - 28857430
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||| ||||||||| |||||||||| ||| ||||||||||| |||||||||||||||| | | |||||| |||||||||||| ||||||||||| |    
T  28857596 ggagaagacagaaaagttctttgacaactcaaa-agaacttttggagtgagtagaagtgaggaacaagagctctatttataggtgaggagccaaagatga 28857498  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctcagatcataaat 174  Q
    |||  | ||||||| |||| ||| | ||||| |||| ||||| ||||| |||| ||||  ||||||||    
T  28857497 gttttagatccaatggctaagatcatttgacagttacaaaattaatgatttgacctcacctcataaat 28857430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 32987782 - 32987938
Alignment:
Q  16 agaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttacaaat 115  Q
    ||||||||| ||||| |||| ||| | |||||||| |||||||| |||||||||||| |||||||||||||| | || | | |||| ||| |||||||||    
T  32987782 agaaaagttttttgaaaactcaaaaa-aacttttgctgtgagtaaaagtgagggagaagagctcaatttata-gcgacgggtcaaatatacgttacaaat 32987879  T
Q  116 ccaatagctaggattagttgaccgttagaaaatcaatgacttgatctcagatcataaat 174  Q
     |||   ||| |||||||| ||||||| ||||||||||  |||||||||  ||||||||    
T  32987880 tcaaagactaagattagttaaccgttacaaaatcaatggtttgatctcacctcataaat 32987938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 27761376 - 27761229
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||||||||||||||    |||||||||||  |||||||||||||||| ||| | |||| |||||||||||| |||||| | || |    
T  27761376 ggagaagagagaaaagttatttgacaact---cgagaacttttgaggtgagtagaagtgaggaaga-gtgctctatttataggtgaggagccacacatga 27761281  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttga 159  Q
    ||| |||||||||  || | ||| | |||||||||| ||||| ||||| ||||    
T  27761280 gtt-caaatccaacggccaagatcatttgaccgttacaaaattaatgatttga 27761229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 31064515 - 31064660
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| |||||||||| || |||||||||| || |||||||||||  ||||| |||||||||| | | |||||  |||||||||||| || |||||||| |    
T  31064515 ggagaagagagaaaaattctttgacaactcaa-gagaacttttgtggtgagaagaagtgaggaacaagagctatatttataggtgaggaaccaaagatga 31064613  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatg 153  Q
    |||  | ||||||| |||| ||| | |||||||||| ||||| ||||    
T  31064614 gttttagatccaatggctacgatcatttgaccgttacaaaataaatg 31064660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 9252899 - 9252952
Alignment:
Q  39 agagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtga 92  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  9252899 agagaacttttggtgtgagtataagtgagggagaggagctatatttataggtga 9252952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 25661385 - 25661279
Alignment:
Q  13 gagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttaca 112  Q
    |||||||||||| |||||||||| || ||||||||||| ||||  || || ||| | |   || ||| |||||||||||||||| || ||||||||||||    
T  25661385 gagagaaaagttctttgacaactcaa-gagaacttttgttgtgtttacaaatgaagaatgagaactctatttataggtgaagaggcagagataagttaca 25661287  T
Q  113 aatccaat 120  Q
    ||||||||    
T  25661286 aatccaat 25661279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 19309010 - 19308952
Alignment:
Q  105 aagttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctc 163  Q
    ||||||||||| ||| ||||| ||||||||||| |||||||||||||||| || |||||    
T  19309010 aagttacaaattcaacagctatgattagttgactgttagaaaatcaatgattttatctc 19308952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 2416198 - 2416245
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  2416198 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 2416245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 9352816 - 9352784
Alignment:
Q  38 aagagaacttttggtgtgagtagaagtgaggga 70  Q
    |||||||||||||||||||||| ||||||||||    
T  9352816 aagagaacttttggtgtgagtataagtgaggga 9352784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 15473361 - 15473408
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  15473361 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 15473408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 47108943 - 47108896
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  47108943 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 47108896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 33722444 - 33722277
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtg-tgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagata 105  Q
    |||| ||||||||||||| |||||||||| ||| ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33722444 ggagaagagagaaaagttctttgacaactcaaa-agaactttttgggatgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagata 33722346  T
Q  106 agttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctcagatcataaat 174  Q
    ||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||  |||||||||    
T  33722345 agttacaaatctaatggctatgattaattgaccgttagaaaatcaatgacttgatctcgcatcataaat 33722277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 55081237 - 55081071
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||  | |||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55081237 ggagaagagagaaaaactctttgacaactcaa-gagaacttttagtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 55081139  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctcagatcataaat 174  Q
    |||||||||||||| ||||||||||  |||||||||||||||||||| ||| ||||||  ||||||||    
T  55081138 gttacaaatccaatggctaggattaaatgaccgttagaaaatcaatggctttatctcacctcataaat 55081071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 16595504 - 16595352
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| ||| |||||| || |||||||||||| |||| |||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  16595504 ggagaagagagaaaagttctttaacaactcaa-gagaacttttggggtgattagaagtgggggagaggaactctatttataggtgaagagccaaagataa 16595406  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgat 160  Q
    |||||||||||||| |||||||||||||||||  || |||||||||||| ||||    
T  16595405 gttacaaatccaatggctaggattagttgacctctacaaaatcaatgacatgat 16595352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 20513666 - 20513817
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| |||||||||| || |||||||||||   |||||| |||||||||||| ||||||||||||||||||  |||||||||||||    
T  20513666 ggagaagagagaaaagttttttgacaactcaa-gagaacttttgagttgagtaaaagtgagggagatgagctcaatttataggtgttgagccaaagataa 20513764  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttga 159  Q
    ||| |||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  20513765 gttgcaaatccaatggttagaattagttgaccgttagaaaatcaatgacttga 20513817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 7216718 - 7216611
Alignment:
Q  53 gtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttacaaatccaatagctaggattagttgaccgttagaaaatcaat 152  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||||| |||| |||| ||||||||||||  || |||||||||    
T  7216718 gtgagtagaagtgagggagaggagctctatttgtaggtgaagaggcaaagatgagttacaaattcaatggctaagattagttgacctctacaaaatcaat 7216619  T
Q  153 gacttgat 160  Q
    ||| ||||    
T  7216618 gacatgat 7216611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 2574873 - 2574721
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||| ||||||| |||||||||| || ||||||||||| ||| |||| |||||| |||| || ||||||||||||| ||| || ||||||||||    
T  2574873 ggagaagagataaaagttctttgacaactcaa-gagaacttttgatgtaagtacaagtgaaggagtggcgctcaatttatagatgatgaaccaaagataa 2574775  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgat 160  Q
    | |||||||||||  ||||| ||||||||| ||||| |||||||| | ||||||    
T  2574774 gatacaaatccaacggctagaattagttgatcgttataaaatcaacggcttgat 2574721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 39991466 - 39991319
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagt--gagggagaggagctcaatttataggtgaagagcc--aaag 102  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||| || ||| | ||||||| || |   |  | ||    
T  39991466 ggagaagagagaaaagttctttgacaact-aaagagaacttttggtgtgagtagaagtaagagggagatgaactctagttataggcgagggatcatacag 39991368  T
Q  103 ataagttacaaatccaatagctaggattagttgaccgttagaaaatcaa 151  Q
    ||||||||||||| |||| |||| ||| | |||||||||| ||||||||    
T  39991367 ataagttacaaattcaatggctatgatcatttgaccgttacaaaatcaa 39991319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 40684401 - 40684244
Alignment:
Q  4 ggaggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaaga 103  Q
    ||||||| ||||||||||||| |||||||||| || || |||||||||||| |||| |||||||| | | || ||| ||||||||| || | |  ||| |    
T  40684401 ggaggagaagagagaaaagttctttgacaactcaa-gaaaacttttggtgtcagtacaagtgaggaataagaactctatttataggcgaggggttaaata 40684303  T
Q  104 taagttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatct 162  Q
    ||||||||||||| |||||   |||||||||||| | || |||||||||| | ||||||    
T  40684302 taagttacaaatctaatagtcgggattagttgactggtacaaaatcaatggcatgatct 40684244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 3381936 - 3381983
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  3381936 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 3381983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 8658064 - 8658017
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  8658064 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 8658017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 10566765 - 10566869
Alignment:
Q  69 gagaggagctcaatttataggtgaagagccaaagataagttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctcagatc 168  Q
    ||||| ||||| |||||||  ||| ||| ||||||| ||| |||||||||||  ||| ||| | |||||  ||| |||||||||||||||| |||  |||    
T  10566765 gagagaagctctatttataaatgatgaggcaaagatgagtaacaaatccaatgactaagatcatttgacaattataaaatcaatgacttgaactcgcatc 10566864  T
Q  169 ataaa 173  Q
    |||||    
T  10566865 ataaa 10566869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 12613710 - 12613769
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgag 67  Q
    |||| ||||||||||||||||||||||| | |||||||||||| ||||  ||| |||||||    
T  12613710 ggagaagagagaaaagttatttgacaac-tcaagagaactttttgtgtctgtataagtgag 12613769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 19737505 - 19737552
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  19737505 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 19737552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 20548945 - 20548898
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  20548945 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 20548898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 39744922 - 39744969
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  39744922 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 39744969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 50188359 - 50188312
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  50188359 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 50188312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 6897937 - 6897771
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| |||||||||| || |||||||||||| || |||||||||||||| ||  | ||||||||||||||||||||||||||||||    
T  6897937 ggagaagagagaaaagttctttgacaactcaa-gagaacttttggggttagtagaagtgagggggaaaaactcaatttataggtgaagagccaaagataa 6897839  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctcagatcataaat 174  Q
    ||||||||| ||||  ||| ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  6897838 gttacaaattcaatgactatgattagttgaccgttagaaaatcaatgacttaatctcacatcataaat 6897771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 29477793 - 29477713
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttatag 88  Q
    |||| ||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  29477793 ggagaagagagaaaagttctttgacaactcaa-gagaacttttggtgtgagtagaagtgagggagatgggctcaatttatag 29477713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 25831889 - 25831792
Alignment:
Q  6 aggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagat 104  Q
    ||||| ||||| ||||||| |||||||||| || ||||||||||||||| || |||||||||  |    ||||| |||||||||||| |||||||||||    
T  25831889 aggagaagagataaaagttctttgacaactcaa-gagaacttttggtgtaagaagaagtgagaaatgaaagctctatttataggtgaggagccaaagat 25831792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 14042203 - 14042361
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttat-----aggtgaagagccaaa 101  Q
    |||| ||||||||||||| |||||||||| || | ||||||||||||||| |||||||||||||||||||||||||||||     |||||||||||||||    
T  14042203 ggagaagagagaaaagttctttgacaactcaagg-gaacttttggtgtgaatagaagtgagggagaggagctcaatttatattataggtgaagagccaaa 14042301  T
Q  102 gataagttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatc 161  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  14042302 gataagttacaaatccgatagctaggattagttgaccgttggaaaatcaatggcttgatc 14042361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 32814601 - 32814454
Alignment:
Q  12 agagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttac 111  Q
    ||||||||||||| ||||| |||| || |||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  32814601 agagagaaaagttctttgataactcaa-gagaacttttggggtgagtagaattgagtgagaggagctcaatttataggtgaagagccaaagataagttac 32814503  T
Q  112 aaatccaatagctaggattagttgaccgttagaaaatcaatgacttgat 160  Q
    ||||||| | |||||||||||||||||   | |||||||||||| ||||    
T  32814502 aaatccattggctaggattagttgaccaccacaaaatcaatgacatgat 32814454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 35130185 - 35130314
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||   ||||||||||| || ||||||||||||  |||||||||||||||||||||||||| |||||||||||||||| ||||||| |    
T  35130185 ggagaagagagaaaaaaaatttgacaactcaa-gagaacttttgggatgagtagaagtgagggagaggagctctatttataggtgaagagtcaaagatga 35130283  T
Q  107 gttacaaatccaatagctaggattagttgac 137  Q
    ||||||||||||||  |||||||||||||||    
T  35130284 gttacaaatccaatgactaggattagttgac 35130314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 29610511 - 29610419
Alignment:
Q  12 agagagaaaagttatttgacaacttaa-agagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaaga 103  Q
    ||||||||||||| |||||||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  29610511 agagagaaaagttttttgacaactcaagagagaacttttggggtgagtagaagtaagggagaggagctcaatttatagatgaagagacaaaga 29610419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 14776132 - 14776233
Alignment:
Q  38 aagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttacaaatccaatagctaggattagttgac 137  Q
    ||||||||||||||||||   |||||||||| |   ||||||   |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  14776132 aagagaacttttggtgtgcaaagaagtgaggaatgtgagctcttcttataggtgaggagccaaagataagttacaaatccaatggttaggattagttgac 14776231  T
Q  138 cg 139  Q
    ||    
T  14776232 cg 14776233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 3917087 - 3917134
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  3917087 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 3917134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 10984570 - 10984617
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  10984570 ggagaagagagaaaagttttttgacaac-tcaagagaacttttggtgtg 10984617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 19714255 - 19714208
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  19714255 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 19714208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 19899523 - 19899476
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  19899523 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 19899476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 20458961 - 20459008
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  20458961 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 20459008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 22232104 - 22232151
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  22232104 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 22232151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 25506025 - 25506072
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  25506025 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 25506072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 14105148 - 14105295
Alignment:
Q  12 agagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttac 111  Q
    |||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  14105148 agagagaaaagttatttgacaactcaa-gagaacttttggggtgagtaaaagtgagggagaggagctctatttataggtgaggagccaaagatgagttac 14105246  T
Q  112 aaatccaatagctaggattagttgaccgttagaaaatcaatgacttgat 160  Q
    ||||||||| |||||||||||||||||  || |||||||||||| ||||    
T  14105247 aaatccaatggctaggattagttgacctctacaaaatcaatgacatgat 14105295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 13060018 - 13059867
Alignment:
Q  6 aggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagata 105  Q
    ||||| ||||||||||||| ||||| |||| || ||||||||||| ||| | || ||||||| || | |||| | |||||||||||| ||| ||||||||    
T  13060018 aggagaagagagaaaagttctttgaaaactcaa-gagaacttttg-tgttaataaaagtgagagatatgagcactatttataggtgaggagtcaaagata 13059921  T
Q  106 agttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttga 159  Q
    ||||| |||| |||| ||||||||||||||||| ||  ||||||||||| ||||    
T  13059920 agttataaattcaatggctaggattagttgaccatttaaaaatcaatgatttga 13059867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 44957083 - 44956943
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| |||||||||| || ||| |||||| || |||||||||||| ||||||| |||||||| |   ||| || |||||||||||| ||  ||||||| |    
T  44957083 ggagaagagagaaaatttctttaacaactcaa-gagaacttttggggtgagtacaagtgaggaatgagagttctatttataggtgatgaatcaaagatga 44956985  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaat 148  Q
     ||  | |||| | ||||| ||| | ||||||||||||||||    
T  44956984 attttagatccgacagctaagatcatttgaccgttagaaaat 44956943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 5870603 - 5870650
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  5870603 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 5870650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 5873745 - 5873792
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  5873745 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 5873792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 15944040 - 15944087
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  15944040 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 15944087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 15952555 - 15952602
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  15952555 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 15952602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 18500795 - 18500748
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  18500795 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 18500748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 35139176 - 35139129
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  35139176 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 35139129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 35147512 - 35147465
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  35147512 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 35147465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 42565431 - 42565478
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  42565431 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 42565478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 42574055 - 42574102
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  42574055 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 42574102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 19950378 - 19950530
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| |||||||||| || |||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||| |    
T  19950378 ggagaagagagaaaagttctttgacaactcaa-gagaacttttgaggtgagtagaagtgagggagaggaactctatttataggtgaagagccaaagatga 19950476  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgat 160  Q
    |||||||||||||| |||| ||||||||||||  || |||||||||||| ||||    
T  19950477 gttacaaatccaatggctatgattagttgacctctacaaaatcaatgacatgat 19950530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 2470536 - 2470683
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| |||||||||| || || |||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  2470536 ggagaagagagaaaagttctttgacaactcaa-gataacttttgggatcagtagaagtgagggagaggagctctatttataggtgaagagccaaagatga 2470634  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgac 155  Q
    |||||||||||||| ||||||||||| |||||  || ||||||||||||    
T  2470635 gttacaaatccaatggctaggattagctgacctctacaaaatcaatgac 2470683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 19954832 - 19954984
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| |||||||||| || |||||||||| || |||||||||||| ||||||||||||| ||||||||| ||| ||||||| |||||||||||||||| |    
T  19954832 ggagaagagagaaaaattctttgacaactcaa-gagaacttttggggtgagtagaagtgtgggagaggaactctatttataagtgaagagccaaagatga 19954930  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgat 160  Q
    |||||||||||| | |||||||||||||||||  || |||||||||||| ||||    
T  19954931 gttacaaatccattggctaggattagttgacctctacaaaatcaatgacatgat 19954984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 7146380 - 7146532
Alignment:
Q  12 agagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttac 111  Q
    |||||||||||||||||||||||| ||| ||||||||||| ||||||| ||| || | |   || ||| ||||||||| || ||||||||||||||||||    
T  7146380 agagagaaaagttatttgacaactcaaa-agaacttttggggtgagtaaaagcgaagaatgagaactctatttataggcgaggagccaaagataagttac 7146478  T
Q  112 aaatccaatagc--taggattagttgaccgttagaaaatcaatgacttgatctc 163  Q
    |||||||||  |  |||||||| ||||||  || |||||||||| | |||||||    
T  7146479 aaatccaatgactataggattaattgaccactacaaaatcaatgtcgtgatctc 7146532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 30779410 - 30779545
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| ||| |||||| ||| | ||||||| |||||  ||||||||||||| | ||     ||||||||| || |||||||||||||    
T  30779410 ggagtagagagaaaagttttttaacaactcaaaaa-aactttttgtgtgtttagaagtgagggaaatga-----atttataggcgaggagccaaagataa 30779503  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaat 148  Q
    ||||||||||||||  ||| |||| |||||||||||||||||    
T  30779504 gttacaaatccaatgactatgattggttgaccgttagaaaat 30779545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 21640696 - 21640558
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| |||||||||| || |||||||||||| ||||||| |||||||| ||| | |||| |||||||||||| ||| ||||||| |    
T  21640696 ggagaagagagaaaagttctttgacaactcaa-gagaacttttggggtgagtaaaagtgaggaaga-gtgctctatttataggtgaggagtcaaagatga 21640599  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaat 148  Q
    ||| |||||||||  || | ||| | |||||||||| |||||    
T  21640598 gtt-caaatccaacggccaagatcatttgaccgttacaaaat 21640558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 4543830 - 4543681
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| |||||||||| || |||||||||||| |||||||||||||||| ||| | |||| | |||||| ||| ||||||| ||| |    
T  4543830 ggagaagagagaaaagttctttgacaactcaa-gagaacttttggggtgagtagaagtgaggaaga-gtgctctagttatagatgaggagccaatgatta 4543733  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttga 159  Q
    ||| ||||||||| | | | ||| | |||||||||| ||||| ||||| ||||    
T  4543732 gtt-caaatccaacaaccaagatcaattgaccgttacaaaattaatgatttga 4543681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 32000335 - 32000288
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  32000335 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 32000288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 32007304 - 32007257
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  32007304 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 32007257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 32025146 - 32025193
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  32025146 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 32025193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 39837065 - 39837112
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  39837065 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 39837112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 39845107 - 39845154
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  39845107 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 39845154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 48431838 - 48431709
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| |||||||||||||||||||||||| || |||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||||| || |    
T  48431838 ggagaagagagaaaagttatttgacaactcaa-gagaacttttggggtgagtagaagtgtgggagatgagctctatttataggtgaagagccaaatatga 48431740  T
Q  107 gttacaaatccaatagctaggattagttgac 137  Q
    |||||||||||||| ||||||||||||||||    
T  48431739 gttacaaatccaatggctaggattagttgac 48431709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 16983521 - 16983676
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| |||||||||| ||||||||||||| || |||||||||||| | || |||||||||||||||||||||| | ||||||||||| |||||||||| |    
T  16983521 ggagaagagagaaaaattatttgacaactcaa-gagaacttttggggagaatagaagtgagggagaggagctctacttataggtgaaaagccaaagatga 16983619  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctc 163  Q
     |||||||||||||  ||| |||||||||||||||| |||||||||| |||||||||    
T  16983620 attacaaatccaatgactatgattagttgaccgttaaaaaatcaatggcttgatctc 16983676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 48435422 - 48435293
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| ||| ||||||||| |||||||||||| |||||||||||||| ||||| | |||| |||||||||| ||||||||||||| |    
T  48435422 ggagaagagagaaaagttctttcacaacttaa-gagaacttttggagtgagtagaagtgaaggagatgggctctatttataggtaaagagccaaagatga 48435324  T
Q  107 gttacaaatccaatagctaggattagttgac 137  Q
    |||||||||||||| ||||||||||||||||    
T  48435323 gttacaaatccaatggctaggattagttgac 48435293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 4662733 - 4662871
Alignment:
Q  16 agaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttacaaat 115  Q
    ||||||||| ||||| |||| || |||||||||||| || | || |||||||  |   ||| || |||||||||| | |||||| |||||||||||||||    
T  4662733 agaaaagttctttgaaaactcaa-gagaacttttggggtaattacaagtgagaaatgagagttctatttataggtaaggagccagagataagttacaaat 4662831  T
Q  116 ccaatagctaggattagttgaccgttagaaaatcaatgac 155  Q
    |||||  ||||||||||||||||| || ||||||||||||    
T  4662832 ccaatgcctaggattagttgaccgctacaaaatcaatgac 4662871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 16815348 - 16815396
Alignment:
Q  6 aggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    ||||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  16815348 aggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 16815396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 17934640 - 17934592
Alignment:
Q  6 aggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    ||||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  17934640 aggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 17934592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 68720 - 68673
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  68720 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 68673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 74813 - 74766
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  74813 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 74766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 8606727 - 8606680
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  8606727 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 8606680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 9524913 - 9524960
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  9524913 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 9524960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 13105137 - 13105184
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  13105137 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 13105184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 13111294 - 13111341
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  13111294 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 13111341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 14887526 - 14887573
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  14887526 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 14887573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 21638056 - 21638103
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  21638056 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 21638103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 23287625 - 23287672
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  23287625 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 23287672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 26386205 - 26386252
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||||||||||||| | ||||||| ||||||||||    
T  26386205 ggagaagagagaaaagttatttgacaac-tcaagagaatttttggtgtg 26386252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 37468593 - 37468546
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  37468593 ggagaagagagaaaagttctttgacaa-ttcaagagaacttttggtgtg 37468546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 48060227 - 48060274
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  48060227 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 48060274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 171250 - 171098
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||||||||||| |||||||||| || || |||||||||  ||||||||||||| |||||||||||| ||||||||||||||||||||| || |    
T  171250 ggagaagagagaaaagttctttgacaactcaa-gataacttttgggatgagtagaagtgaaggagaggagctctatttataggtgaagagccaaaaatga 171152  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgat 160  Q
    |||||||||||||| |||||||||| ||||||  || |||||||||||| ||||    
T  171151 gttacaaatccaatggctaggattaattgacctctacaaaatcaatgacatgat 171098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 18265029 - 18264891
Alignment:
Q  18 aaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttacaaatcc 117  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| | |||| |||||||| ||| ||||||||||| |||| |||||||    
T  18265029 aaaagttatttgacaacttaa-gagaacttttggggtgagtagaagtgaggaaga-gtgctctatttatagatgaggagccaaagatgagtt-caaatcc 18264933  T
Q  118 aatagctaggattagttgaccgttagaaaatcaatgacttga 159  Q
    ||  || | ||| | |||||||||| ||||| ||||| ||||    
T  18264932 aacggccaagatcatttgaccgttacaaaattaatgatttga 18264891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 15591152 - 15591307
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 106  Q
    |||| ||||| ||||||||||||  |||| ||| |||||||||||  |||||  |||||| | |   |||||| |||||||||||| ||| |||||||||    
T  15591152 ggagaagagaaaaaagttatttgttaactcaaa-agaacttttgggatgagtgcaagtgaagaatgagagctctatttataggtgaggagacaaagataa 15591250  T
Q  107 gttacaaatccaatagctaggattagttgaccgttagaaaatcaatgacttgatctc 163  Q
    ||||||||||||||   ||||||||||||| || || || ||||||||| |||||||    
T  15591251 gttacaaatccaatgattaggattagttgatcgctacaatatcaatgacatgatctc 15591307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 16747759 - 16747704
Alignment:
Q  13 gagagaaaagttatttgacaacttaaagagaacttttggtgt-gagtagaagtgagg 68  Q
    ||||||||| ||||||||||| || ||||||||||||||||| | ||||||||||||    
T  16747759 gagagaaaaattatttgacaa-ttcaagagaacttttggtgtggggtagaagtgagg 16747704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 20639357 - 20639404
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  20639357 ggagaagagagaaaagttctttgacaa-ttcaagagaacttttggtgtg 20639404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 24956332 - 24956379
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  24956332 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 24956379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 24964792 - 24964839
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  24964792 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 24964839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 25041761 - 25041808
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  25041761 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 25041808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 25526754 - 25526707
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  25526754 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 25526707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 25533436 - 25533389
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  25533436 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 25533389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 28844503 - 28844456
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  28844503 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 28844456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 28853113 - 28853066
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  28853113 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 28853066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 30249888 - 30249841
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  30249888 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 30249841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 36448818 - 36448771
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  36448818 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 36448771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 36455202 - 36455155
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  36455202 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 36455155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 37048931 - 37048884
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  37048931 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 37048884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 40015465 - 40015418
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||||||||||||| | |||| |||||||||||||    
T  40015465 ggagaagagagaaaagttatttgacaac-tcaagataacttttggtgtg 40015418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 163923 - 163863
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagg 68  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||||  ||| ||||||||    
T  163923 ggagaagagagaaaagttttttgacaactt-aagagaacttttggtgtttgtataagtgagg 163863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 5228 - 5321
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaa 101  Q
    |||| |||||||| |||| |||||||||| ||  |||||||||||| | |||||||||||||||   |||||  ||||||| |||| ||||||||    
T  5228 ggagaagagagaatagttctttgacaactcaat-agaacttttggtttaagtagaagtgagggatgtgagctatatttataagtgaggagccaaa 5321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 39710 - 39757
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  39710 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 39757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 18242 - 18289
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  18242 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 18289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 89365 - 89412
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  89365 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 89412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 33218 - 33265
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  33218 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 33265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 24157 - 24110
Alignment:
Q  7 ggagcagagagaaaagttatttgacaacttaaagagaacttttggtgtg 55  Q
    |||| ||||||||||||| ||||||||| | ||||||||||||||||||    
T  24157 ggagaagagagaaaagttctttgacaac-tcaagagaacttttggtgtg 24110  T

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