View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_41 (Length: 250)
Name: NF3219_low_41
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4894395 - 4894622
Alignment:
| Q |
1 |
tgcttggggcatttattcaatggtnnnnnnnngtcatagtttttgttttattttaaaaacaaagatattgtc---------aaatttatcattagtgata |
91 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
4894395 |
tgcttggggcatttattcaatggtaaaaaaaagtcatagtttttgttttattttaaaaacaaagatactgtcaaatttacaaaatttatcattagtgata |
4894494 |
T |
|
| Q |
92 |
agaaaaagctaaattccaagaattnnnnnnntggaagtaatattaacacatcatcatataaaattagacaattctaccnnnnnnnntataaaattagaca |
191 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4894495 |
agaaaaagctaaattccaagaatt-aaaaaatggaagtaatattaacacttcatcatataaaattagacaattctaccaaaaaaaatataaaattagaca |
4894593 |
T |
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| Q |
192 |
agatattttttgataaaattcagctttaa |
220 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4894594 |
agatattttttgataaaattcagctttaa |
4894622 |
T |
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