View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_51 (Length: 238)
Name: NF3219_low_51
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6627233 - 6627068
Alignment:
| Q |
1 |
tattttatgtgcatgtactcaatggaaaactaacatgtctctttttacattgcacggagcaaaaca-----gtcatgtaattacatgtcaaattgcacag |
95 |
Q |
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| T |
6627233 |
tattttatgtgcatgtactcaatggaaacctaacatgtctctttttacattgcacggagcaaaacaaaacagtcatgtaattacatgtcaaattgcagag |
6627134 |
T |
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| Q |
96 |
ataaatttcaatacatgaatgatactgtaattacacttagttttgaatctctgtaattacattcaa |
161 |
Q |
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| T |
6627133 |
ataaatttcaatacatgaatgatactgtaattacacttagttttgaatctctgtaattatattcaa |
6627068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6635032 - 6634867
Alignment:
| Q |
1 |
tattttatgtgcatgtactcaatggaaaactaacatgtctctttttacattgcacggagcaaaaca-----gtcatgtaattacatgtcaaattgcacag |
95 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
6635032 |
tattttatgtgcatgtactcaatggaaacctaacatgtctctttttacattgcacggagcaaaacaaaacagtcatgtaattacatgtcaaattgcagag |
6634933 |
T |
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| Q |
96 |
ataaatttcaatacatgaatgatactgtaattacacttagttttgaatctctgtaattacattcaa |
161 |
Q |
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| T |
6634932 |
ataaatttcaatacatgaatgatactgtaattacacttagttttgaatctctgtaattatattcaa |
6634867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 6626584 - 6626518
Alignment:
| Q |
158 |
tcaacggttaaaaccgagagagtgtcaccggttctaaacgaaccatgatgccatcaatcttcaagtt |
224 |
Q |
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| T |
6626584 |
tcaacggttaaaaccgagagagtgtcaccggttctaaacgaaccatgatgccatcaatcttcaagtt |
6626518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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