View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_54 (Length: 235)
Name: NF3219_low_54
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_54 |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 4894037 - 4893934
Alignment:
| Q |
121 |
tacctgggcaacgatggttatatcaaggatagaatctccaaaaggtaagacactgttattaacaacaaagagatgaagcttttgaatctcgaccaatatt |
220 |
Q |
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| T |
4894037 |
tacctgagcaacgatggttatatcaaggatagaatctccaaaaggtaggacactgttattaacaacaaagagatgaagcttttgaatctcgaccaatatt |
4893938 |
T |
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| Q |
221 |
ttga |
224 |
Q |
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|||| |
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| T |
4893937 |
ttga |
4893934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 4910429 - 4910340
Alignment:
| Q |
128 |
gcaacgatggttatatcaaggatagaatctccaaaaggtaagacactgttattaacaacaaagagatgaagcttttgaatctcgaccaat |
217 |
Q |
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| T |
4910429 |
gcaatgattgttatgtcaaggatagaatccccaatagctaggacgctgctattaacaacaaagagatggagcttttgaatctcaaccaat |
4910340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 4917491 - 4917393
Alignment:
| Q |
121 |
tacctgggcaacgatggttatatcaaggatagaatctccaaaaggtaagacactgttattaacaacaaagagatgaagcttttgaatctcgaccaatat |
219 |
Q |
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| T |
4917491 |
tacctgagcaatgattgttatgtcatggatagaatccccaacagctaggacattattgttaacaacaaagagatgaagctgttgaatctcaaccaatat |
4917393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4894191 - 4894155
Alignment:
| Q |
1 |
cgaaccttagtttcaacaagtgaaagtctaatatact |
37 |
Q |
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| T |
4894191 |
cgaaccttagtttcaacaagtgaaagtctaatatact |
4894155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 17116327 - 17116252
Alignment:
| Q |
140 |
atatcaaggatagaatctccaaaaggtaagacactgttattaacaacaaagagatgaagcttttgaatctcgacca |
215 |
Q |
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| T |
17116327 |
atatcaaggatagaatctccaaaaggtaagacactattatttacaacaaatagttgaaacctttgaatctcaacca |
17116252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 17125761 - 17125692
Alignment:
| Q |
146 |
aggatagaatctccaaaaggtaagacactgttattaacaacaaagagatgaagcttttgaatctcgacca |
215 |
Q |
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| T |
17125761 |
aggatagaatctccaaaaggtaagacactattattgacaacgaatagtttaaacctttgaatctcaacca |
17125692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 25112453 - 25112547
Alignment:
| Q |
121 |
tacctgggcaacgatggttatatcaaggatagaatctccaaaaggtaagacactgttattaacaacaaagagatgaagcttttgaatctcgacca |
215 |
Q |
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| T |
25112453 |
tacctgagcaatgatggtaatgtcgagcgtagaatctccaaagggtaagacactgttattgacaacaaatagttgaaatttttgaatttcgacca |
25112547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 25240957 - 25240887
Alignment:
| Q |
119 |
gctacctgggcaacgatggttatatcaaggatagaatctccaaaaggtaagacactgttattaacaacaaa |
189 |
Q |
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| T |
25240957 |
gctacctgagcaatgatggtaatgtcgagtatagaatctccaaagggtatgacactgctattgacaacaaa |
25240887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 16914 - 16850
Alignment:
| Q |
151 |
agaatctccaaaaggtaagacactgttattaacaacaaagagatgaagcttttgaatctcgacca |
215 |
Q |
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|||||||||||||||||| ||||| |||||||||||| || |||| | ||||||||||||||| |
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| T |
16914 |
agaatctccaaaaggtaaaacactaccattaacaacaaatagttgaaacctttgaatctcgacca |
16850 |
T |
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