View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_56 (Length: 235)
Name: NF3219_low_56
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 32107440 - 32107584
Alignment:
| Q |
1 |
aatcaaagctgacaatttttccaagatagtttcaaagaatgtcactccaatattgctccaaagctttgttgccatcaactactatgttcaaccacctctt |
100 |
Q |
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| T |
32107440 |
aatcaaacctgacaattttttcaagatagtttgaaagaatgtcggtccaatattgctccaaagctttgttgccatcaactactatgtttaaccacctctt |
32107539 |
T |
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| Q |
101 |
gttctccattgaattgtgattaagtaattgaaacaatcgatctac |
145 |
Q |
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| T |
32107540 |
gttctccattgatttgtgattaagtaattgaaacaatcgatctac |
32107584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 32077282 - 32077426
Alignment:
| Q |
1 |
aatcaaagctgacaatttttccaagatagtttcaaagaatgtcactccaatattgctccaaagctttgttgccatcaactactatgttcaaccacctctt |
100 |
Q |
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||||||| |||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32077282 |
aatcaaacctgacaattttttcaagatagtttgaaagaatgtcggtccaatatttctccaaagctttgttgccatcaactactatgtttaaccacctctt |
32077381 |
T |
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| Q |
101 |
gttctccattgaattgtgattaagtaattgaaacaatcgatctac |
145 |
Q |
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| T |
32077382 |
gttctccattgatttgtaattaagtaattgaaacaatcgatctac |
32077426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 32089656 - 32089792
Alignment:
| Q |
9 |
ctgacaatttttccaagatagtttcaaagaatgtcactccaatattgctccaaagctttgttgccatcaactactatgttcaaccacctcttgttctcca |
108 |
Q |
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| T |
32089656 |
ctgacaattttttcaagatagtttgaaagaatatcatgccaatattgctccaaagctttgttgccatcaacaactatgttcaaccacctcttgttctcca |
32089755 |
T |
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| Q |
109 |
ttgaattgtgattaagtaattgaaacaatcgatctac |
145 |
Q |
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| T |
32089756 |
ttgatttgtgattaagtaattgaaacaatcgatctac |
32089792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 32122158 - 32122219
Alignment:
| Q |
83 |
tatgttcaaccacctcttgttctccattgaattgtgattaagtaattgaaacaatcgatcta |
144 |
Q |
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| T |
32122158 |
tatgttccaccacctcttattttcctatgatttttgatcaagtaattgaaacaatcgatcta |
32122219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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