View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_57 (Length: 232)
Name: NF3219_low_57
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 46737042 - 46737263
Alignment:
| Q |
1 |
atcaacaggggatgttgttgctcatagaaaaccatgtatggatcatgatcacattccatattaatgaaggcatctgcactaccattagtttcacggtaca |
100 |
Q |
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| T |
46737042 |
atcaacaggggatgttgttgctcatagaaaaccatgtatggatcatgatcgcattccatattaatgaaggcatctgcacaaccattagcttcacggtaca |
46737141 |
T |
|
| Q |
101 |
catgacacactctaacttcacaatctgtttgaagtatccgacgaatatgttgcactagcctccaccaatctgtcaacactgtattaggatcaagaatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46737142 |
catgacacactctaacttcacaatctgtttgaagtatccgacgaatatgttgcactagcctccaccaatctgtctacactgtattaggatcaagaatatt |
46737241 |
T |
|
| Q |
201 |
ttcagctaccacctttgcttct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
46737242 |
ttcagctaccacctttgcttct |
46737263 |
T |
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