View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3219_low_58 (Length: 230)

Name: NF3219_low_58
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3219_low_58
NF3219_low_58
[»] chr4 (12 HSPs)
chr4 (1-209)||(51112029-51112237)
chr4 (35-126)||(51112253-51112344)
chr4 (37-123)||(51111995-51112081)
chr4 (12-91)||(51112234-51112313)
chr4 (105-195)||(51111890-51111980)
chr4 (12-75)||(51111989-51112052)
chr4 (157-209)||(51112236-51112288)
chr4 (89-209)||(51112290-51112410)
chr4 (29-90)||(51111875-51111936)
chr4 (35-127)||(51112165-51112257)
chr4 (142-209)||(51112455-51112522)
chr4 (173-209)||(51112422-51112458)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 51112237 - 51112029
Alignment:
Q  1 agattatggaagtgatgctgcacagaaggccaaagatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagatgcagcacac 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  51112237 agattatggaagtgatgctgcacagaaggcaaaagatgcagcatacaagactaaagactatgctggtgatgctgccgagaagaccaaagatgcagcatac 51112138  T
Q  101 aagaccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgcagaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51112137 aagaccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgcagaga 51112038  T
Q  201 agaccaaag 209  Q
    |||||||||    
T  51112037 agaccaaag 51112029  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 51112344 - 51112253
Alignment:
Q  35 gatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagatgcagcacacaagaccaaagattatgcgggtgatgc 126  Q
    ||||||||||||||| ||||||| |||||||||||||||||  ||| | |||||||||||||| ||||||||||||||||||| ||||||||    
T  51112344 gatgcagcatacaagtctaaagagtatgctggtgatgctgcacagatggccaaagatgcagcatacaagaccaaagattatgcaggtgatgc 51112253  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 51112081 - 51111995
Alignment:
Q  37 tgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagatgcagcacacaagaccaaagattatgcgggtga 123  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||| ||||| |||||    
T  51112081 tgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaagatgcagcatataagaccaaagactatgctggtga 51111995  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 51112313 - 51112234
Alignment:
Q  12 gtgatgctgcacagaaggccaaagatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagat 91  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||    
T  51112313 gtgatgctgcacagatggccaaagatgcagcatacaagaccaaagattatgcaggtgatgcagcagagaagaccaaagat 51112234  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 51111980 - 51111890
Alignment:
Q  105 ccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgc 195  Q
    ||||||||||||| ||||||||| |  | || || ||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  51111980 ccaaagattatgcaggtgatgctgctcacaatactagagagtatgccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgc 51111890  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 51112052 - 51111989
Alignment:
Q  12 gtgatgctgcacagaaggccaaagatgcagcatacaagactaaagactatgctggtgatgctgc 75  Q
    ||||||||||| ||||| |||||||||||||||| ||||| ||||||||||||||||| |||||    
T  51112052 gtgatgctgcagagaagaccaaagatgcagcatataagaccaaagactatgctggtgaagctgc 51111989  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 51112288 - 51112236
Alignment:
Q  157 tgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaag 209  Q
    ||||||||||||| | ||||| |||||||||||||| ||||||||||||||||    
T  51112288 tgcagcatacaagaccaaagattatgcaggtgatgcagcagagaagaccaaag 51112236  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 51112410 - 51112290
Alignment:
Q  89 gatgcagcacacaagaccaaagattatgcgggtgatgctacagaaaagacaagagaatatgccaatgctgcagcatacaagtctaaagactatgcaggtg 188  Q
    ||||| ||||| || |||||||| ||||| |||| ||||||  | ||||  | ||| ||||| | || ||||||||||||||||||||| ||||| ||||    
T  51112410 gatgctgcacagaaaaccaaagactatgctggtggtgctactcagaagagcaaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtg 51112311  T
Q  189 atgctgcagagaagaccaaag 209  Q
    |||||||| ||| | ||||||    
T  51112310 atgctgcacagatggccaaag 51112290  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 51111936 - 51111875
Alignment:
Q  29 gccaaagatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaaga 90  Q
    ||||| ||||||||||||||  ||||||||||||| |||||||||||| | || ||||||||    
T  51111936 gccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgctcaaaaaaccaaaga 51111875  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 51112257 - 51112165
Alignment:
Q  35 gatgcagcatacaagactaaagactatgctggtgatgctgctgagaagaccaaagatgcagcacacaagaccaaagattatgcgggtgatgct 127  Q
    ||||||||| | ||||| ||||| ||||   ||||||||||  ||||| | |||||||||||| ||||||| ||||| ||||| |||||||||    
T  51112257 gatgcagcagagaagaccaaagattatggaagtgatgctgcacagaaggcaaaagatgcagcatacaagactaaagactatgctggtgatgct 51112165  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 51112522 - 51112455
Alignment:
Q  142 agaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaag 209  Q
    ||||||||||| || ||||||  ||||||| ||||| |||||||||||||||||| | || |||||||    
T  51112522 agaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaaaaccaaag 51112455  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 51112458 - 51112422
Alignment:
Q  173 aaagactatgcaggtgatgctgcagagaagaccaaag 209  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  51112458 aaagagtatgcaggtgatgctacagagaagaccaaag 51112422  T

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