View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3219_low_6 (Length: 513)

Name: NF3219_low_6
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3219_low_6
NF3219_low_6
[»] chr8 (32 HSPs)
chr8 (112-449)||(39984502-39984837)
chr8 (433-505)||(39984414-39984486)
chr8 (112-170)||(19256881-19256939)
chr8 (112-169)||(17469784-17469841)
chr8 (112-168)||(17477032-17477088)
chr8 (112-168)||(19256647-19256703)
chr8 (114-168)||(34843084-34843138)
chr8 (112-168)||(20702763-20702819)
chr8 (112-168)||(24075367-24075423)
chr8 (112-168)||(34842645-34842701)
chr8 (112-168)||(39743496-39743552)
chr8 (115-169)||(42846670-42846724)
chr8 (112-169)||(7267526-7267583)
chr8 (115-168)||(19472314-19472367)
chr8 (115-168)||(19543239-19543292)
chr8 (115-168)||(19589404-19589457)
chr8 (112-164)||(4828264-4828316)
chr8 (108-168)||(12547066-12547126)
chr8 (113-172)||(4828030-4828090)
chr8 (116-168)||(16050228-16050280)
chr8 (112-168)||(24532482-24532538)
chr8 (114-170)||(25325611-25325667)
chr8 (112-168)||(39960158-39960214)
chr8 (112-168)||(39984883-39984939)
chr8 (107-168)||(34653118-34653179)
chr8 (119-155)||(12317266-12317302)
chr8 (116-168)||(16049996-16050048)
chr8 (112-168)||(39052990-39053046)
chr8 (112-163)||(26800573-26800624)
chr8 (112-168)||(11232255-11232311)
chr8 (112-168)||(15042731-15042787)
chr8 (112-168)||(39052598-39052654)
[»] chr4 (37 HSPs)
chr4 (113-168)||(9685365-9685420)
chr4 (112-168)||(20821940-20821996)
chr4 (112-168)||(21498321-21498377)
chr4 (112-168)||(21498762-21498818)
chr4 (112-168)||(53828350-53828406)
chr4 (112-168)||(54055093-54055149)
chr4 (112-169)||(53828584-53828641)
chr4 (112-168)||(5846346-5846402)
chr4 (112-168)||(9685599-9685655)
chr4 (112-168)||(12869090-12869146)
chr4 (112-168)||(25052819-25052875)
chr4 (112-168)||(35819189-35819245)
chr4 (112-168)||(53814990-53815046)
chr4 (112-168)||(54054866-54054922)
chr4 (112-168)||(980111-980167)
chr4 (112-168)||(1518131-1518187)
chr4 (112-168)||(5846113-5846169)
chr4 (119-168)||(11103964-11104013)
chr4 (113-168)||(22231135-22231190)
chr4 (119-169)||(14783255-14783305)
chr4 (112-173)||(50543628-50543689)
chr4 (113-162)||(53814736-53814785)
chr4 (112-148)||(16066052-16066088)
chr4 (112-168)||(27634142-27634198)
chr4 (112-168)||(31254468-31254524)
chr4 (112-168)||(39902624-39902680)
chr4 (112-168)||(40717502-40717558)
chr4 (112-169)||(9279193-9279250)
chr4 (112-177)||(22863432-22863497)
chr4 (112-169)||(27634577-27634634)
chr4 (112-168)||(6218406-6218462)
chr4 (112-168)||(11036807-11036863)
chr4 (112-164)||(22827509-22827561)
chr4 (112-168)||(28245587-28245643)
chr4 (112-168)||(35788626-35788682)
chr4 (112-168)||(35788861-35788917)
chr4 (112-164)||(44118920-44118972)
[»] chr2 (31 HSPs)
chr2 (112-173)||(28407854-28407915)
chr2 (112-168)||(27036473-27036529)
chr2 (112-168)||(32884074-32884130)
chr2 (113-168)||(27897667-27897722)
chr2 (112-168)||(2324207-2324263)
chr2 (112-168)||(2324441-2324497)
chr2 (112-168)||(13486300-13486356)
chr2 (112-169)||(37770004-37770061)
chr2 (112-168)||(5509280-5509336)
chr2 (112-168)||(17854753-17854809)
chr2 (113-173)||(19191672-19191732)
chr2 (112-168)||(21591748-21591804)
chr2 (116-168)||(29718295-29718347)
chr2 (112-168)||(36316112-36316168)
chr2 (116-168)||(40718272-40718324)
chr2 (112-166)||(5509048-5509102)
chr2 (116-173)||(17854994-17855051)
chr2 (112-168)||(8424855-8424911)
chr2 (112-168)||(16533514-16533570)
chr2 (112-168)||(17719367-17719423)
chr2 (113-168)||(37812330-37812385)
chr2 (112-169)||(40379505-40379562)
chr2 (112-168)||(94081-94137)
chr2 (112-168)||(4662198-4662254)
chr2 (112-168)||(5711500-5711556)
chr2 (112-168)||(5711736-5711792)
chr2 (112-168)||(14466236-14466292)
chr2 (114-170)||(14466473-14466529)
chr2 (112-168)||(16419469-16419525)
chr2 (112-168)||(33606115-33606171)
chr2 (112-168)||(40379270-40379326)
[»] chr6 (23 HSPs)
chr6 (110-170)||(27653182-27653242)
chr6 (110-168)||(27656425-27656483)
chr6 (112-168)||(27772913-27772969)
chr6 (112-170)||(27772679-27772737)
chr6 (112-168)||(19712919-19712975)
chr6 (112-168)||(21690689-21690745)
chr6 (112-168)||(8026356-8026412)
chr6 (112-168)||(15600903-15600959)
chr6 (112-168)||(5572676-5572732)
chr6 (112-168)||(28868018-28868074)
chr6 (112-149)||(11721891-11721928)
chr6 (112-168)||(5572445-5572501)
chr6 (112-168)||(7915817-7915873)
chr6 (112-168)||(9705221-9705277)
chr6 (107-168)||(12330346-12330407)
chr6 (112-169)||(13353167-13353224)
chr6 (112-168)||(4868638-4868694)
chr6 (114-166)||(13740885-13740937)
chr6 (114-166)||(13746385-13746437)
chr6 (112-168)||(15081969-15082025)
chr6 (112-168)||(24554084-24554140)
chr6 (112-168)||(33494506-33494562)
chr6 (112-168)||(33796293-33796349)
[»] scaffold1034 (1 HSPs)
scaffold1034 (112-169)||(3202-3259)
[»] chr5 (25 HSPs)
chr5 (107-168)||(8098285-8098346)
chr5 (113-168)||(21209983-21210038)
chr5 (118-168)||(8098518-8098568)
chr5 (115-168)||(29909551-29909604)
chr5 (112-168)||(13296859-13296915)
chr5 (116-168)||(27133058-27133110)
chr5 (113-168)||(19522288-19522343)
chr5 (114-168)||(42295546-42295600)
chr5 (115-172)||(9368558-9368615)
chr5 (107-168)||(24269926-24269987)
chr5 (112-168)||(4481624-4481680)
chr5 (112-168)||(6637570-6637625)
chr5 (112-168)||(8081175-8081231)
chr5 (128-168)||(21209764-21209804)
chr5 (112-168)||(24346562-24346618)
chr5 (112-168)||(24487706-24487762)
chr5 (107-166)||(8287771-8287830)
chr5 (114-168)||(6637804-6637858)
chr5 (112-166)||(9368799-9368853)
chr5 (112-168)||(18333526-18333582)
chr5 (112-168)||(19705870-19705926)
chr5 (112-168)||(20510703-20510759)
chr5 (112-168)||(33337299-33337355)
chr5 (112-168)||(41666818-41666874)
chr5 (112-168)||(41667054-41667110)
[»] chr3 (26 HSPs)
chr3 (112-168)||(20327910-20327966)
chr3 (112-168)||(28087280-28087336)
chr3 (115-168)||(6487397-6487450)
chr3 (107-168)||(17638202-17638263)
chr3 (112-168)||(11589752-11589808)
chr3 (112-168)||(23691253-23691309)
chr3 (112-168)||(23708053-23708109)
chr3 (112-168)||(23726509-23726565)
chr3 (112-168)||(23744965-23745021)
chr3 (112-168)||(24063490-24063546)
chr3 (107-168)||(17638375-17638436)
chr3 (112-168)||(1723137-1723192)
chr3 (112-168)||(9273162-9273218)
chr3 (114-168)||(8018935-8018989)
chr3 (112-168)||(9272928-9272984)
chr3 (112-168)||(23708285-23708341)
chr3 (112-168)||(23726741-23726797)
chr3 (112-168)||(23745197-23745253)
chr3 (112-168)||(27670453-27670509)
chr3 (110-170)||(54567857-54567917)
chr3 (110-168)||(35038253-35038311)
chr3 (112-168)||(35038489-35038545)
chr3 (116-173)||(38791515-38791572)
chr3 (112-168)||(16239558-16239614)
chr3 (112-168)||(16927010-16927066)
chr3 (112-168)||(34992517-34992573)
[»] chr7 (30 HSPs)
chr7 (115-169)||(36206127-36206181)
chr7 (110-168)||(40746465-40746523)
chr7 (112-168)||(2544276-2544332)
chr7 (112-168)||(2544508-2544564)
chr7 (112-168)||(4267821-4267877)
chr7 (112-168)||(4268021-4268077)
chr7 (112-168)||(6634822-6634878)
chr7 (112-168)||(17202146-17202202)
chr7 (112-168)||(26562134-26562190)
chr7 (112-168)||(34027360-34027416)
chr7 (112-168)||(34027594-34027650)
chr7 (114-167)||(26029024-26029077)
chr7 (112-168)||(2404235-2404291)
chr7 (112-166)||(31257092-31257146)
chr7 (112-168)||(3519786-3519842)
chr7 (112-168)||(31257328-31257384)
chr7 (112-168)||(43688220-43688276)
chr7 (116-155)||(40746245-40746284)
chr7 (112-170)||(47710408-47710466)
chr7 (112-170)||(47722064-47722122)
chr7 (112-169)||(29469571-29469628)
chr7 (110-167)||(44874405-44874462)
chr7 (112-168)||(1596795-1596851)
chr7 (112-168)||(6001496-6001552)
chr7 (112-164)||(10882066-10882118)
chr7 (136-168)||(17202350-17202382)
chr7 (112-168)||(18826549-18826605)
chr7 (112-168)||(21055014-21055070)
chr7 (112-168)||(26239977-26240033)
chr7 (112-168)||(29469807-29469863)
[»] chr1 (21 HSPs)
chr1 (107-168)||(52127688-52127749)
chr1 (112-168)||(3169733-3169789)
chr1 (117-167)||(25137369-25137419)
chr1 (112-168)||(12245023-12245079)
chr1 (116-168)||(51588959-51589011)
chr1 (116-168)||(51589193-51589245)
chr1 (113-168)||(28408104-28408159)
chr1 (112-168)||(15986394-15986450)
chr1 (112-168)||(35772231-35772287)
chr1 (112-168)||(51459891-51459947)
chr1 (123-168)||(3169967-3170012)
chr1 (116-168)||(51460147-51460199)
chr1 (116-168)||(51590007-51590059)
chr1 (112-163)||(40079124-40079175)
chr1 (107-169)||(38080571-38080633)
chr1 (112-165)||(2859453-2859506)
chr1 (112-169)||(20208587-20208644)
chr1 (112-168)||(4112832-4112888)
chr1 (112-168)||(25713360-25713416)
chr1 (112-168)||(51459766-51459822)
chr1 (112-168)||(52650832-52650888)
[»] scaffold0334 (1 HSPs)
scaffold0334 (112-168)||(4490-4546)
[»] scaffold0481 (2 HSPs)
scaffold0481 (113-168)||(3533-3588)
scaffold0481 (115-168)||(3301-3354)
[»] scaffold0005 (1 HSPs)
scaffold0005 (119-169)||(56425-56475)
[»] scaffold0001 (1 HSPs)
scaffold0001 (112-167)||(429841-429896)
[»] scaffold0519 (1 HSPs)
scaffold0519 (112-168)||(2118-2174)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 112 - 449
Target Start/End: Complemental strand, 39984837 - 39984502
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagtttacattgaatacatatattttcaaaaagcggccttatcac 211  Q
    |||||||||||||||||||||| || ||||||||||| ||||||  |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  39984837 cccccacttataaacaaattgtcagaccaactcctaatcgatgtgagactcttaacggtttacattaaatacatatattttcaaaaagcggacttatcac 39984738  T
Q  212 cctaannnnnnnnnnnnn--ccactcaaagttcagatgactttcgtccagnnnnnnncaagacaataatagtaagtctttttggccccgcttaacataat 309  Q
    |||||               ||||||||||||||||||||||||||||||       ||||||||||   ||||||||||||||||||||||||||||||    
T  39984737 cctaatttatttatttttttccactcaaagttcagatgactttcgtccagaaaaaa-caagacaata---gtaagtctttttggccccgcttaacataat 39984642  T
Q  310 catttgannnnnnnaggaacataatcatttgattataatcaaggcatgtgtcaagttgctatgggaatataaattgacgtccaaaccaaattggacaaaa 409  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39984641 catttgatttttttaggaacataatcatttgattataatcaaggcatgtgtcaagttgctatgggaatataaattgacgtccaaaccaaattggataaaa 39984542  T
Q  410 caaaaaacaggttaattcactttaaacacgttcttcaatt 449  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39984541 caaaaaacaggttaattcactttaaacacgttcttcaatt 39984502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 433 - 505
Target Start/End: Complemental strand, 39984486 - 39984414
Alignment:
Q  433 aaacacgttcttcaattattggatccaatgatatccagtaattaagttggttctctagcatacactctgtgct 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39984486 aaacacgttcttcaattattggatccaatgatatccagtaattaagttggttctctagcatacactctgtgct 39984414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 19256881 - 19256939
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagt 170  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  19256881 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaacagt 19256939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 17469841 - 17469784
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  17469841 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaacag 17469784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 17477088 - 17477032
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  17477088 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 17477032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 19256647 - 19256703
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  19256647 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 19256703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 34843138 - 34843084
Alignment:
Q  114 cccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  34843138 cccacttataaacaaattgttagaccaactcctaaccgatgtgggactcttaaca 34843084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 20702819 - 20702763
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  20702819 cccccacttataaacaaactgtcaggccaactcctaaccgatgtgggactcttaaca 20702763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 24075367 - 24075423
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  24075367 cccccacttataaacaaagtgtcaggccaactcctaaccgatgtgggactcttaaca 24075423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 34842701 - 34842645
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  34842701 cccccacttataaacaaattgtcaggccaactcctaactgatgtgggactcttaaca 34842645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 39743552 - 39743496
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  39743552 ccccaacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 39743496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 42846670 - 42846724
Alignment:
Q  115 ccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    ||||||||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  42846670 ccacttataaacaaattgtcaggccaactcctaaccgatgtgagactcttaacag 42846724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 7267526 - 7267583
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    |||||||||||||||||||||| | |||||||||||||||||||  ||||||||||||    
T  7267526 cccccacttataaacaaattgtcaagccaactcctaaccgatgtgtgactcttaacag 7267583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 19472314 - 19472367
Alignment:
Q  115 ccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  19472314 ccacttataaacaaattgtcaggccaattcctaaccgatgtgggactcttaaca 19472367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 19543239 - 19543292
Alignment:
Q  115 ccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  19543239 ccacttataaacaaattgtcaggccaattcctaaccgatgtgggactcttaaca 19543292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 19589457 - 19589404
Alignment:
Q  115 ccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  19589457 ccacttataaacaaattgtcaggccaattcctaaccgatgtgggactcttaaca 19589404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 4828316 - 4828264
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactctt 164  Q
    |||||||||||||||||||||| | ||||||||||||||||||| ||||||||    
T  4828316 cccccacttataaacaaattgtcatgccaactcctaaccgatgtgggactctt 4828264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 12547126 - 12547066
Alignment:
Q  108 gattcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||| ||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||    
T  12547126 gattgccccacttataaataaattgtcagaccaactcctaaccgatgtgggactcttaaca 12547066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 4828090 - 4828030
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactc-ttaacagttt 172  Q
    ||||||||||||||||||||| | | ||||||||||||||||| |||||| ||||||||||    
T  4828090 ccccacttataaacaaattgtcatgtcaactcctaaccgatgtgggactctttaacagttt 4828030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 16050280 - 16050228
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||| ||||||| |||||||||||||||||||||  |||||||||||    
T  16050280 cacttataaataaattgtcaggccaactcctaaccgatgtgagactcttaaca 16050228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 24532482 - 24532538
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| |||||| ||||||| ||||||||||||    
T  24532482 cccccacttataaacacattgtcaggccatctcctatccgatgtgggactcttaaca 24532538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 25325667 - 25325611
Alignment:
Q  114 cccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagt 170  Q
    |||||||||||||| ||||||||||||  ||||| ||||||| ||||||||||||||    
T  25325667 cccacttataaacacattgttaggccatgtcctatccgatgtgggactcttaacagt 25325611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 39960214 - 39960158
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||| | |||||| |||||| ||||||| ||||||||||||    
T  39960214 cccccacttataaacaaattttcaggccatctcctatccgatgtgggactcttaaca 39960158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 39984939 - 39984883
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||||| | ||||||||||| |||||  |||||||||||    
T  39984939 cccccacttataaacaaattgttatgtcaactcctaactgatgtgagactcttaaca 39984883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 34653179 - 34653118
Alignment:
Q  107 ggattcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||| || |||||||||||||||||| ||  |||||||||||||||||  |||||||||||    
T  34653179 ggattacctcacttataaacaaattgtcagatcaactcctaaccgatgtgagactcttaaca 34653118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 12317302 - 12317266
Alignment:
Q  119 ttataaacaaattgttaggccaactcctaaccgatgt 155  Q
    |||||||||||||||||||||||||| ||||||||||    
T  12317302 ttataaacaaattgttaggccaactcttaaccgatgt 12317266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 16050048 - 16049996
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| | |||||||||||||||||||||  |||| ||||||    
T  16050048 cacttataaacaaattatcaggccaactcctaaccgatgtgagacttttaaca 16049996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 39052990 - 39053046
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| ||||||| ||||||||||||    
T  39052990 cccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 39053046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 26800573 - 26800624
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactct 163  Q
    |||||||||||| ||||||| | ||||||||| ||||||||||| |||||||    
T  26800573 cccccacttatagacaaattatcaggccaacttctaaccgatgtgggactct 26800624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 11232255 - 11232311
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| ||||||||||||    
T  11232255 cccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 11232311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 15042731 - 15042787
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  || || ||||||| ||||||||||||    
T  15042731 cccccacttataaacacattgtcaggccatgtcgtatccgatgtgggactcttaaca 15042787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 39052598 - 39052654
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| | ||||| ||||||||||||    
T  39052598 cccccacttataaacacattgtcaggccatcacctatctgatgtgggactcttaaca 39052654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 9685420 - 9685365
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9685420 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 9685365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 20821996 - 20821940
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  20821996 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 20821940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 21498377 - 21498321
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  21498377 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 21498321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 21498818 - 21498762
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  21498818 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 21498762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 53828350 - 53828406
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  53828350 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 53828406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 54055093 - 54055149
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  54055093 cccccacttataaacaaattgttaggccaacttctaaccgatgtgggactcttaaca 54055149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 53828584 - 53828641
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    |||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||    
T  53828584 cccccacttataaacaaattgtcaggccaactcctaaccgatgtggaactcttaacag 53828641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 5846402 - 5846346
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  5846402 cccccacttataaacaaattgtcatgccaactcctaaccgatgtgggactcttaaca 5846346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 9685655 - 9685599
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||    
T  9685655 cccccacttataaacaaattgttagaccaactcctaaccgatgcgggactcttaaca 9685599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 12869090 - 12869146
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  12869090 cccccacttataaacaaattgtcaggccaactgctaactgatgtaggactcttaaca 12869146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 25052875 - 25052819
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  25052875 cccccacttataaacaaattgtcaggccaattcctaaccgatgtgggactcttaaca 25052819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 35819189 - 35819245
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  35819189 cccccacatataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 35819245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 53814990 - 53815046
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  53814990 cccccacttataaacaaattgtcaggccaactcctaaccgatgtggaactcttaaca 53815046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 54054866 - 54054922
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  54054866 cccccacttataaacaaattgttaggtcaactcctaatcgatgtgggactcttaaca 54054922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 980111 - 980167
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||    
T  980111 cccccacttataaacaaattctcaggtcaactcctaaccgatgtgggactcttaaca 980167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 1518187 - 1518131
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| |||||| |||||    
T  1518187 cccccacttataaacaaattgtcaggtcaactcctaaccgatgtgggactcataaca 1518131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 5846169 - 5846113
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || ||||||||||||||||||  |||||||||||    
T  5846169 cccccacttataaacaaattgtcagaccaactcctaaccgatgtgagactcttaaca 5846113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 11103964 - 11104013
Alignment:
Q  119 ttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||||||||    
T  11103964 ttataaataaattgtcaggccaactcctaaccgatgtgggactcttaaca 11104013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 22231135 - 22231190
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||| ||||| ||||||  ||||| ||||||||||||||||||||    
T  22231135 ccccacttataaacacattgtcaggccatatcctatccgatgtaggactcttaaca 22231190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 14783255 - 14783305
Alignment:
Q  119 ttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    ||||||||||||||| ||  ||||||||||||||||| |||||||||||||    
T  14783255 ttataaacaaattgtcagatcaactcctaaccgatgtgggactcttaacag 14783305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 50543628 - 50543689
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagttta 173  Q
    |||||||||||| ||| ||||| |||||| | |||| ||||||| |||||||||||||||||    
T  50543628 cccccacttatacacacattgtcaggccatcacctatccgatgtgggactcttaacagttta 50543689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 53814736 - 53814785
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactc 162  Q
    ||||||||||||||||||||| ||||||||||||| |||| || ||||||    
T  53814736 ccccacttataaacaaattgtcaggccaactcctagccgacgttggactc 53814785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 16066088 - 16066052
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaa 148  Q
    |||||||||||||||||||||| ||||||||||||||    
T  16066088 cccccacttataaacaaattgtcaggccaactcctaa 16066052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 27634142 - 27634198
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||||||||    
T  27634142 cccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 27634198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 31254468 - 31254524
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| ||||||| ||||||||||||    
T  31254468 cccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 31254524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 39902624 - 39902680
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||||||||    
T  39902624 cccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 39902680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 40717502 - 40717558
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||| | ||||||||||| ||| ||||| | ||||||||||    
T  40717502 cccccacttataaacaaattatcaggccaactcccaactgatgtggaactcttaaca 40717558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 9279250 - 9279193
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    |||||||||||||||| ||||| |||||| | |||| |||||||  ||||||||||||    
T  9279250 cccccacttataaacacattgtcaggccatcacctatccgatgtgcgactcttaacag 9279193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 22863497 - 22863432
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagtttacatt 177  Q
    |||||||||||||||| ||||| |||||| || ||  |||||||  ||||||||||||||| ||||    
T  22863497 cccccacttataaacacattgtcaggccatcttctgtccgatgtgagactcttaacagtttccatt 22863432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 27634577 - 27634634
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    |||||||| ||||||| ||||| ||||||  ||||| ||||||| |||||||||||||    
T  27634577 cccccactcataaacacattgtcaggccatgtcctatccgatgtgggactcttaacag 27634634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 6218462 - 6218406
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||||||| || |||||| | |||||  |||||||||||    
T  6218462 cccccacttataaacacattgttaggtcatctcctatctgatgtgagactcttaaca 6218406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 11036807 - 11036863
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| ||||||| | ||||||||||    
T  11036807 cccccacttataaacacattgtcaggccatcacctatccgatgttgtactcttaaca 11036863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 22827561 - 22827509
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactctt 164  Q
    ||||||||||||||||  |||| |||||| |||||| ||||||| ||||||||    
T  22827561 cccccacttataaacacgttgtcaggccatctcctatccgatgtgggactctt 22827509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 28245587 - 28245643
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| |||||||  |||||||||||    
T  28245587 cccccacttataaacacattgtcaggccatcacctatccgatgtgagactcttaaca 28245643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 35788682 - 35788626
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||| | ||||| ||||||||||||    
T  35788682 cccccacttataaacacattgtcaggccatgtcctatctgatgtgggactcttaaca 35788626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 35788917 - 35788861
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  | ||| ||||||| ||||||||||||    
T  35788917 cccccacttataaacacattgtcaggccatgttctatccgatgtgggactcttaaca 35788861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 44118920 - 44118972
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactctt 164  Q
    |||||||||||||||| ||||| |||||| ||| || ||||||| ||||||||    
T  44118920 cccccacttataaacacattgtcaggccatctcttatccgatgtgggactctt 44118972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 28407854 - 28407915
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagttta 173  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  28407854 cccccacttataaacaaattgttaggccaattcctaaccgatgtgggactcttaacagttta 28407915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 27036473 - 27036529
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  27036473 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 27036529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 32884130 - 32884074
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  32884130 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 32884074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 27897667 - 27897722
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  27897667 ccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 27897722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 2324263 - 2324207
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  2324263 cccccacttataaacaaattgtcagaccaactcctaaccgatgtgggactcttaaca 2324207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 2324497 - 2324441
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  2324497 cccccacttataaacaaattgtcaggccaacttctaaccgatgtgggactcttaaca 2324441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 13486356 - 13486300
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||    
T  13486356 cccccacttataaataaattgtcaggccaactcctaaccgatgtgggactcttaaca 13486300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 37770004 - 37770061
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    |||||||||||||||||||||| |  |||||||||||||||||| |||||||||||||    
T  37770004 cccccacttataaacaaattgtcaaaccaactcctaaccgatgtgggactcttaacag 37770061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 5509336 - 5509280
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||    
T  5509336 cccccacttataaacaaattgtcgggccaactcctaactgatgtgggactcttaaca 5509280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 17854753 - 17854809
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||| |||||||||||||||| ||||||||||||    
T  17854753 cccccacttataaacagattgtcaggctaactcctaaccgatgtgggactcttaaca 17854809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 19191672 - 19191732
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagttta 173  Q
    ||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||| ||||    
T  19191672 ccccacttataaacaaactgtcaggccaactcctaaccgatgggggactcttaacatttta 19191732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 21591804 - 21591748
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||    
T  21591804 cccccacttataaacaaattgtcagaccaactcctaatcgatgtgggactcttaaca 21591748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 29718347 - 29718295
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  29718347 cacttataaacaaattgtcaagccaactcctaaccgatgtgggactcttaaca 29718295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 36316112 - 36316168
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||    
T  36316112 cccccacttataaacaaattgtcaggccaacttctaactgatgtgggactcttaaca 36316168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 40718272 - 40718324
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  40718272 cacttataaacaaattgttaggtcaactcctaaccgatgtgagactcttaaca 40718324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 5509102 - 5509048
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaa 166  Q
    |||||||||||||||||||||| || ||||||||||||||||||  |||||||||    
T  5509102 cccccacttataaacaaattgtcagaccaactcctaaccgatgtgtgactcttaa 5509048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 17854994 - 17855051
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagttta 173  Q
    |||||||||||||||||| ||| |||||||||||||||||  ||||||||||| ||||    
T  17854994 cacttataaacaaattgtcaggtcaactcctaaccgatgtgagactcttaacacttta 17855051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 8424911 - 8424855
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||| ||||||| || |||||||||||| ||||| ||||| ||||||    
T  8424911 cccccacttataaataaattgtcagaccaactcctaactgatgtgggacttttaaca 8424855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 16533570 - 16533514
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| ||| ||||||||||||||||    
T  16533570 cccccacttataaacacattgtcaggccatcacctatccggtgtaggactcttaaca 16533514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 17719423 - 17719367
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| ||||||| ||||||||||||    
T  17719423 cccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 17719367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 37812330 - 37812385
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||||||||    
T  37812330 ccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 37812385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 40379505 - 40379562
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    |||||||||||||||| | ||| |||||| | |||| ||||||| |||||||||||||    
T  40379505 cccccacttataaacacactgtcaggccatcacctatccgatgtgggactcttaacag 40379562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 94081 - 94137
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| | ||| |||||| | |||| ||||||| ||||||||||||    
T  94081 cccccacttataaacacactgtcaggccatcacctatccgatgtgggactcttaaca 94137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 4662254 - 4662198
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||| ||  ||||| ||||||| ||||||||||||    
T  4662254 cccccacttataaacatattgtcaggtcatgtcctatccgatgtgggactcttaaca 4662198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 5711500 - 5711556
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| ||||||||||||    
T  5711500 cccccacttataaacacattgtcaggccatttcctttccgatgtgggactcttaaca 5711556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 5711736 - 5711792
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| ||||||||||||    
T  5711736 cccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 5711792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 14466236 - 14466292
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||||||||||  ||||  ||||||| | ||||||||||    
T  14466236 cccccacttataaacacattgttaggccatgtcctgtccgatgtggaactcttaaca 14466292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 14466473 - 14466529
Alignment:
Q  114 cccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagt 170  Q
    |||||||||||||| ||||| ||||||  ||||  ||||||| ||||||||||||||    
T  14466473 cccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaacagt 14466529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 16419525 - 16419469
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| || |||  ||||| ||||||| ||||||||||||    
T  16419525 cccccacttataaacacattgtcagaccatgtcctatccgatgtgggactcttaaca 16419469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 33606115 - 33606171
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||| ||||||||||| ||| | |||||| |||||| ||||||| ||||||||||||    
T  33606115 cccctacttataaacacattttcaggccatctcctatccgatgtgggactcttaaca 33606171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 40379270 - 40379326
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| | ||| |||||| | |||| ||||||| ||||||||||||    
T  40379270 cccccacttataaacacactgtcaggccatcacctatccgatgtgggactcttaaca 40379326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 27653242 - 27653182
Alignment:
Q  110 ttcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagt 170  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  27653242 ttcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaacagt 27653182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 27656483 - 27656425
Alignment:
Q  110 ttcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  27656483 ttcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 27656425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 27772969 - 27772913
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  27772969 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 27772913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 27772737 - 27772679
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagt 170  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  27772737 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggaatcttaacagt 27772679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 19712975 - 19712919
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  19712975 cccccacttataaacaaattgtcaggccaactcctaaccgatgtggaactcttaaca 19712919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 21690745 - 21690689
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  21690745 cccccacttataaacaaattgtcaggccaaatcctaaccgatgtgggactcttaaca 21690689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 8026412 - 8026356
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||    
T  8026412 cccccacttataaacaaattgtcaggccaactcataaccgacgtgggactcttaaca 8026356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 15600959 - 15600903
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||| | || |||||||||||||||||| ||||||||||||    
T  15600959 cccccacttataaacaaattatcagaccaactcctaaccgatgtgggactcttaaca 15600903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 5572676 - 5572732
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| | |||||||||||| |||||| ||| ||||||||    
T  5572676 cccccacttataaacaaattgtcatgccaactcctaaacgatgtgggattcttaaca 5572732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 28868018 - 28868074
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||| ||||||| ||| |||||| |||||||||| ||||||||||||    
T  28868018 cccccacttataaataaattgtcaggtcaactcgtaaccgatgtgggactcttaaca 28868074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 11721928 - 11721891
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaac 149  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11721928 cccccacttataaacaaattgttagaccaactcctaac 11721891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 5572445 - 5572501
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||  |||| ||||||    
T  5572445 ccccaacttataaacaaattgtcaggcaaactcctaaccgatgtgagacttttaaca 5572501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 7915873 - 7915817
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||||| ||| || |||| ||||||||||||    
T  7915873 cccccacttataaacacattgtcaggccaacttctatccaatgttggactcttaaca 7915817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 9705277 - 9705221
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||||| ||||  ||||| ||||||| ||||||||||||    
T  9705277 cccccacttataaacacattgttaagccatgtcctatccgatgtgggactcttaaca 9705221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 12330346 - 12330407
Alignment:
Q  107 ggattcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||| ||||||||||||||| ||||| || |||  ||||| ||||||| ||||||||||||    
T  12330346 ggattgccccacttataaacacattgtcagaccatgtcctatccgatgtgggactcttaaca 12330407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 13353224 - 13353167
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| |||||||||||||    
T  13353224 cccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaacag 13353167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 4868638 - 4868694
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| ||||||||||||    
T  4868638 cccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 4868694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 13740937 - 13740885
Alignment:
Q  114 cccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaa 166  Q
    |||||||||||||||||||| |||||||| | || ||||||| | ||||||||    
T  13740937 cccacttataaacaaattgtcaggccaacacatatccgatgtggaactcttaa 13740885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 13746437 - 13746385
Alignment:
Q  114 cccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaa 166  Q
    |||||||||||||||||||| |||||||| | || ||||||| | ||||||||    
T  13746437 cccacttataaacaaattgtcaggccaacacatatccgatgtggaactcttaa 13746385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 15081969 - 15082025
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||| |||||| ||||| || ||| |||||||||| ||| ||||||||||||    
T  15081969 cccccacttgtaaacatattgtcagtccatctcctaaccgttgtgggactcttaaca 15082025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 24554140 - 24554084
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||| | ||||| || ||| |||||| ||||||| ||||||||||||    
T  24554140 cccccacttataaatatattgtcagaccatctcctatccgatgtgggactcttaaca 24554084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 33494562 - 33494506
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||| | | |||| |||||| ||||||| ||||||||||||    
T  33494562 cccccacttataaacatattttcaagccatctcctatccgatgtgggactcttaaca 33494506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 33796349 - 33796293
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| ||||||||||||    
T  33796349 cccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 33796293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1034 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 3259 - 3202
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  3259 cccccacttataaacaaatagtaaggccaactcctaaccgatgtaggactcttaacag 3202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 8098346 - 8098285
Alignment:
Q  107 ggattcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  8098346 ggattgccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 8098285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 21209983 - 21210038
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  21209983 ccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 21210038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 8098568 - 8098518
Alignment:
Q  118 cttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  8098568 cttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 8098518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 29909551 - 29909604
Alignment:
Q  115 ccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||    
T  29909551 ccacttataaataaattgtcaggccaactcctaaccgatgtcggactcttaaca 29909604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 13296915 - 13296859
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || |||||||||||||||||  ||||||||||||    
T  13296915 cccccacttataaacaaattgtcagaccaactcctaaccgatgcgggactcttaaca 13296859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 27133058 - 27133110
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  27133058 cacttataaacaaattgtcaggccaactcctaaccgatgtgagactcttaaca 27133110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 19522343 - 19522288
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||    
T  19522343 ccccacttataaataaattgtcagtccaactcctaaccgatgtgggactcttaaca 19522288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 42295600 - 42295546
Alignment:
Q  114 cccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||    
T  42295600 cccacttataaacaaattatcaggccaactcctaactgatgtgggactcttaaca 42295546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 9368615 - 9368558
Alignment:
Q  115 ccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagttt 172  Q
    ||||||||||||| ||||| | |||| |||||| |||||||| |||||||||||||||    
T  9368615 ccacttataaacacattgtcacgccatctcctatccgatgtatgactcttaacagttt 9368558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 24269926 - 24269987
Alignment:
Q  107 ggattcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||| ||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||||||||    
T  24269926 ggattaccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 24269987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 4481624 - 4481680
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||| ||||||||| ||||| ||||||||| ||| ||||||| ||||||||||||    
T  4481624 cccccatttataaacacattgtcaggccaacttctatccgatgtgggactcttaaca 4481680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 6637625 - 6637570
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||||||||||| ||||||||||||    
T  6637625 cccccacttataaacacattgtcaggccatttcctaaccgatgt-ggactcttaaca 6637570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 8081175 - 8081231
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||||||||    
T  8081175 cccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 8081231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 21209764 - 21209804
Alignment:
Q  128 aattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  21209764 aattgtcaggccaactcctaaccgatgtgggactcttaaca 21209804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 24346562 - 24346618
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||||||||    
T  24346562 cccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 24346618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 24487706 - 24487762
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||| | || ||||||||||||||||||  |||||||||||    
T  24487706 cccccacttataaacatattttcagaccaactcctaaccgatgtgagactcttaaca 24487762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 8287830 - 8287771
Alignment:
Q  107 ggattcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaa 166  Q
    ||||| ||||||||||||||||||||  || |||||||||| |||||||  |||||||||    
T  8287830 ggattgccccacttataaacaaattgccagaccaactcctagccgatgtgtgactcttaa 8287771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 6637858 - 6637804
Alignment:
Q  114 cccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||| ||| ||||| ||| || |||||||||||||| ||||||||||||    
T  6637858 cccacttatagacacattgtcaggtcatctcctaaccgatgtgggactcttaaca 6637804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 9368853 - 9368799
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaa 166  Q
    |||||||||||||||| ||||| | |||| |||||| ||||||| ||||||||||    
T  9368853 cccccacttataaacacattgtcatgccatctcctatccgatgtgggactcttaa 9368799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 18333526 - 18333582
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| || ||| |||||| ||||||| ||| ||||||||    
T  18333526 cccccacttataaacacattgtcagaccatctcctatccgatgtgggattcttaaca 18333582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 19705926 - 19705870
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||| |  ||||| ||||||| ||||||||||||    
T  19705926 cccccacttataaacacattgtcaggctatgtcctacccgatgtgggactcttaaca 19705870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 20510703 - 20510759
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| ||||||| || |||||||||    
T  20510703 cccccacttataaacatattgtcaggccatcacctatccgatgtggggctcttaaca 20510759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 33337299 - 33337355
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| || |||| ||||||||||||    
T  33337299 cccccacttataaacatattgtcaggccatcacctatccaatgtgggactcttaaca 33337355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 41666818 - 41666874
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| ||||||||||||    
T  41666818 cccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 41666874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 41667054 - 41667110
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| ||||||||||||    
T  41667054 cccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 41667110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 20327910 - 20327966
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  20327910 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 20327966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 28087280 - 28087336
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  28087280 cccccacttataaacaaattgttaggccaactcctaaccgatgtgagactcttaaca 28087336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 6487397 - 6487450
Alignment:
Q  115 ccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  6487397 ccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 6487450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 17638263 - 17638202
Alignment:
Q  107 ggattcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  17638263 ggattgccccacttataaacaaattgtcaggccaactcctaaccgatgtggaactcttaaca 17638202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 11589808 - 11589752
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  11589808 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgagactcttaaca 11589752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 23691253 - 23691309
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  23691253 cccccacttataaacaaattgtcaggctaactcctaaccgatgtgggactcttaaca 23691309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 23708053 - 23708109
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  23708053 cccccacttataaacaaattgtcaggctaactcctaaccgatgtgggactcttaaca 23708109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 23726509 - 23726565
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  23726509 cccccacttataaacaaattgtcaggctaactcctaaccgatgtgggactcttaaca 23726565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 23744965 - 23745021
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  23744965 cccccacttataaacaaattgtcaggctaactcctaaccgatgtgggactcttaaca 23745021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 24063490 - 24063546
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  24063490 cccccacttataaacaaattgtcaggctaactcctaaccgatgtgggactcttaaca 24063546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 17638436 - 17638375
Alignment:
Q  107 ggattcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||| ||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||    
T  17638436 ggattgccccacttataaacaaattgtcaggccagcttctaaccgatgtgggactcttaaca 17638375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 1723137 - 1723192
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  1723137 cccccacttataaacaaattgtcaggccaact-ctaaccgatgtgggactcttaaca 1723192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 9273218 - 9273162
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || |||| ||||||||||||| ||||||||||||    
T  9273218 cccccacttataaacaaattgtcagaccaattcctaaccgatgtgggactcttaaca 9273162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 8018989 - 8018935
Alignment:
Q  114 cccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||    
T  8018989 cccacttataaacaaattttcaggccaacttctaaccgatgtgggactcttaaca 8018935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 9272984 - 9272928
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||| | ||||||| |||||||||||||  |||||||||||    
T  9272984 cccccacttataaacaaattatcaggccaattcctaaccgatgtgagactcttaaca 9272928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 23708285 - 23708341
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || | |||||||||| ||||| ||||||||||||    
T  23708285 cccccacttataaacaaattgtcagactaactcctaactgatgtgggactcttaaca 23708341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 23726741 - 23726797
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || | |||||||||| ||||| ||||||||||||    
T  23726741 cccccacttataaacaaattgtcagactaactcctaactgatgtgggactcttaaca 23726797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 23745197 - 23745253
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || | |||||||||| ||||| ||||||||||||    
T  23745197 cccccacttataaacaaattgtcagactaactcctaactgatgtgggactcttaaca 23745253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 27670453 - 27670509
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||| |||| ||||||| |||| |||||||| ||||||||||||    
T  27670453 cccccacttataaacaatttgtcaggccaattcctgaccgatgtgggactcttaaca 27670509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 54567917 - 54567857
Alignment:
Q  110 ttcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagt 170  Q
    |||||||||||||||||| ||||| ||||||  ||||| ||||| ||||||||||||||||    
T  54567917 ttcccccacttataaacacattgtcaggccatgtcctatccgatataggactcttaacagt 54567857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 35038253 - 35038311
Alignment:
Q  110 ttcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||| ||||| |||||| | |||| ||||||| ||||||||||||    
T  35038253 ttcccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 35038311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 35038489 - 35038545
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| ||||||| ||||||||||||    
T  35038489 cccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 35038545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 38791515 - 38791572
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagttta 173  Q
    |||||||||| | ||||| || ||| |||||| ||||||| |||||||||||||||||    
T  38791515 cacttataaatacattgtcagaccatctcctatccgatgtgggactcttaacagttta 38791572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 16239614 - 16239558
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||| |||||||  |||||||||||    
T  16239614 cccccacttataaacacattgtcaggccatgtcctatccgatgtgagactcttaaca 16239558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 16927010 - 16927066
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  | ||| ||||||| ||||||||||||    
T  16927010 cccccacttataaacacattgtcaggccatgttctatccgatgtgggactcttaaca 16927066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 34992573 - 34992517
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| || ||| | |||| ||||||| ||||||||||||    
T  34992573 cccccacttataaacacattgtcagaccatcacctatccgatgtgggactcttaaca 34992517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 36206127 - 36206181
Alignment:
Q  115 ccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  36206127 ccacttataaacaaattgttaggccaactcctaaccgatgtggaactcttaacag 36206181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 40746523 - 40746465
Alignment:
Q  110 ttcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  40746523 ttcccccacttataaacaaattgtcaggccaactcctaaccaatgtgggactcttaaca 40746465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 2544276 - 2544332
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  2544276 cccccacttataaacaaattgtcagaccaactcctaaccgatgtgggactcttaaca 2544332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 2544508 - 2544564
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||||||||||||||||| || ||||||||||||    
T  2544508 cccccacttataaacaaattgtcaggccaactcctaaccgacgtgggactcttaaca 2544564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 4267877 - 4267821
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  4267877 cccccacttataaacaaattgtcagaccaactcctaaccgatgtgggactcttaaca 4267821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 4268077 - 4268021
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  4268077 cccccacttataaacaaattgtcaggccaactcctaactgatgtgggactcttaaca 4268021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 6634878 - 6634822
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  6634878 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgagactcttaaca 6634822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 17202202 - 17202146
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  17202202 cccccacttataaacaaattgtcaggccaactcttaaccgatgtgggactcttaaca 17202146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 26562134 - 26562190
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  26562134 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgagactcttaaca 26562190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 34027416 - 34027360
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  34027416 cccccacttataaacaaattgtcaggccaactcctaaccgatgtgggattcttaaca 34027360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 34027650 - 34027594
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||    
T  34027650 cccccacttataaacaaattgtcaggccaacttctaactgatgtgggactcttaaca 34027594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 26029024 - 26029077
Alignment:
Q  114 cccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaac 167  Q
    |||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  26029024 cccatttaaaaataaattgtcaggccaactcctaaccgatgtaggactcttaac 26029077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 2404235 - 2404291
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| || ||| |||||||||||||| ||||||||||||    
T  2404235 cccccacttataaacacattgtcagtccatctcctaaccgatgtgggactcttaaca 2404291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 31257092 - 31257146
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaa 166  Q
    |||||||||||||||||||||| || |||||| |||||||||||  |||||||||    
T  31257092 cccccacttataaacaaattgtcagaccaacttctaaccgatgtgagactcttaa 31257146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 3519786 - 3519842
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| ||||||| ||||||||||||    
T  3519786 cccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 3519842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 31257328 - 31257384
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||| ||||||| || ||||||||||||||||||  ||| |||||||    
T  31257328 cccccacttataaataaattgtcagaccaactcctaaccgatgtgagacgcttaaca 31257384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 43688220 - 43688276
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||||||||    
T  43688220 cccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 43688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 40746284 - 40746245
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgt 155  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  40746284 cacttataaacaaattgtcaggccaactcctaaccaatgt 40746245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 47710466 - 47710408
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagt 170  Q
    |||||||||||||||| ||||| |||||| | |||| |||||||  |||||||||||||    
T  47710466 cccccacttataaacacattgtaaggccatcacctatccgatgtgagactcttaacagt 47710408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 47722122 - 47722064
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacagt 170  Q
    |||||||||||||||| ||||| |||||| | |||| |||||||  |||||||||||||    
T  47722122 cccccacttataaacacattgtaaggccatcacctatccgatgtgagactcttaacagt 47722064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 29469628 - 29469571
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| |||||||||||||    
T  29469628 cccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaacag 29469571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 44874405 - 44874462
Alignment:
Q  110 ttcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaac 167  Q
    |||||||||||||||||| ||||| |||  | |||||| ||||||| |||||||||||    
T  44874405 ttcccccacttataaacacattgtcaggttatctcctatccgatgtgggactcttaac 44874462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 1596851 - 1596795
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||| | ||||||||||||  ||||  ||||||| ||||||||||||    
T  1596851 cccccacttataaaaacattgttaggccatgtcctgtccgatgtgggactcttaaca 1596795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 6001496 - 6001552
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||| || || ||| ||||||| ||||||||||||    
T  6001496 cccccacttataaacatattgtcaggtcatcttctatccgatgtgggactcttaaca 6001552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 10882066 - 10882118
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactctt 164  Q
    |||||||||||||||||||||| | |||||||||| | | |||| ||||||||    
T  10882066 cccccacttataaacaaattgtcatgccaactccttatcaatgtgggactctt 10882118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 17202382 - 17202350
Alignment:
Q  136 ggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||| ||||||||||||    
T  17202382 ggccaactcctaaccgatgtgggactcttaaca 17202350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 18826549 - 18826605
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||| || |||||| || |||| ||||||||||||    
T  18826549 cccccacttataaacacattgtcaggtcatctcctatccaatgtgggactcttaaca 18826605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 21055014 - 21055070
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| | |||| ||||| | ||||||||||||    
T  21055014 cccccacttataaacatattgtcaggccatcacctatccgatatgggactcttaaca 21055070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 26239977 - 26240033
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| || |||  ||||| ||||||| ||||||||||||    
T  26239977 cccccacttataaacacattgtcagaccatgtcctatccgatgtcggactcttaaca 26240033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 29469863 - 29469807
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| ||||||||||||    
T  29469863 cccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 29469807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 52127749 - 52127688
Alignment:
Q  107 ggattcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  52127749 ggattgccccacttataaacaaattcttaggtcaactcctaaccgatgtgggactcttaaca 52127688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 3169789 - 3169733
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  3169789 cccccacttataaacaaattgtcagaccaactcctaaccgatgtgggactcttaaca 3169733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 25137369 - 25137419
Alignment:
Q  117 acttataaacaaattgttaggccaactcctaaccgatgtaggactcttaac 167  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  25137369 acttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaac 25137419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 12245023 - 12245079
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||  || ||||||||||| |||||||||||||||||||    
T  12245023 cccccacttataaacaaattgccagaccaactcctaatcgatgtaggactcttaaca 12245079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 51589011 - 51588959
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  51589011 cacttataaacaaattgtcagaccaactcctaaccgatgtgggactcttaaca 51588959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 51589245 - 51589193
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  51589245 cacttataaacaaattgtcagaccaactcctaaccgatgtgggactcttaaca 51589193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 28408104 - 28408159
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||    
T  28408104 ccccacttataaacaaattgtcagaccaacttctaaccgatgtgggactcttaaca 28408159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 15986394 - 15986450
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||| | |||||| ||||||||||||||||||||    
T  15986394 cccccacttataaacacattgtcaggctatctcctatccgatgtaggactcttaaca 15986450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 35772287 - 35772231
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| |||||| |||||| ||||||| ||||||||||||    
T  35772287 cccccacttataaacacattgtcaggccatctcctatccgatgtgggactcttaaca 35772231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 51459891 - 51459947
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| |||||||||||| | |||| ||||||| ||||||||||||    
T  51459891 cccccacttataaacacattgttaggccatcacctatccgatgtgggactcttaaca 51459947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 3170012 - 3169967
Alignment:
Q  123 aaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||| || |||||||||||||||||| ||||||||||||    
T  3170012 aaacaaattgtcagaccaactcctaaccgatgtgggactcttaaca 3169967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 51460147 - 51460199
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||| |||||||||||| | |||| ||||||| ||||||||||||    
T  51460147 cacttataaacacattgttaggccatcacctatccgatgtgggactcttaaca 51460199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 51590059 - 51590007
Alignment:
Q  116 cacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||| || | |||||||||| ||||| ||||||||||||    
T  51590059 cacttataaacaaattgtcagacaaactcctaactgatgtgggactcttaaca 51590007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 40079175 - 40079124
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactct 163  Q
    |||||||||||||||| ||||| ||| || |||||| |||||||||||||||    
T  40079175 cccccacttataaacacattgtcaggtcatctcctatccgatgtaggactct 40079124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 38080633 - 38080571
Alignment:
Q  107 ggattcccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    ||||| ||||| ||||||||| ||||| |||||| |||| | ||||||| |||||||||||||    
T  38080633 ggattgccccaattataaacacattgtcaggccatctcccatccgatgtgggactcttaacag 38080571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 2859453 - 2859506
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactctta 165  Q
    |||||||||||||||| ||||| |||||| | |||| ||||||| |||||||||    
T  2859453 cccccacttataaacacattgtcaggccatcacctatccgatgtgggactctta 2859506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 20208587 - 20208644
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    |||||||||||||||| ||||| || |||  ||||| ||||||| |||||||||||||    
T  20208587 cccccacttataaacacattgtcagaccatgtcctatccgatgtgggactcttaacag 20208644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 4112832 - 4112888
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||| | ||||||| ||||||||||||    
T  4112832 cccccacttataaacacattgtcaggccatgtcccatccgatgtgggactcttaaca 4112888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 25713416 - 25713360
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| || ||| | |||| ||||||| ||||||||||||    
T  25713416 cccccacttataaacacattgtcagaccatcacctatccgatgtgggactcttaaca 25713360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 51459766 - 51459822
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| |||||||||| | | |||| ||||| | ||||||||||||    
T  51459766 cccccacttataaacacattgttaggctatcacctatccgatatgggactcttaaca 51459822  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 52650832 - 52650888
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| |||||  ||||| |||||| ||||||| |||||| |||||    
T  52650832 cccccacttataaacacattgtccggccatctcctatccgatgtgggactcctaaca 52650888  T

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Target: scaffold0334 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 4490 - 4546
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| | ||||||||||    
T  4490 cccccacttataaacaaattgtcaggccaactcctaactgatgtggcactcttaaca 4546  T

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Target: scaffold0481 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 3533 - 3588
Alignment:
Q  113 ccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||    
T  3533 ccccacttataaacaaattgtcatgtcaactcctaaccgatgtgggactcttaaca 3588  T

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Target: scaffold0481; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 3301 - 3354
Alignment:
Q  115 ccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    ||||||||||||||||| |  ||||||||||||| ||||||  |||||||||||    
T  3301 ccacttataaacaaattatctggccaactcctaatcgatgtgagactcttaaca 3354  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 56475 - 56425
Alignment:
Q  119 ttataaacaaattgttaggccaactcctaaccgatgtaggactcttaacag 169  Q
    ||||||||||||||| ||  ||||||||||||||||| |||||||||||||    
T  56475 ttataaacaaattgtcagatcaactcctaaccgatgtgggactcttaacag 56425  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 429896 - 429841
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaac 167  Q
    |||||||||||||||| ||||| |||||| | |||| ||||||| |||||||||||    
T  429896 cccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaac 429841  T

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Target: scaffold0519 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 2174 - 2118
Alignment:
Q  112 cccccacttataaacaaattgttaggccaactcctaaccgatgtaggactcttaaca 168  Q
    |||||||||||||||| ||||| ||||||  ||||  ||||||| ||||||||||||    
T  2174 cccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 2118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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