View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3219_low_60 (Length: 224)

Name: NF3219_low_60
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3219_low_60
NF3219_low_60
[»] chr4 (14 HSPs)
chr4 (14-114)||(24470821-24470926)
chr4 (14-107)||(24420700-24420799)
chr4 (20-111)||(24421138-24421235)
chr4 (20-98)||(24420946-24421024)
chr4 (13-77)||(24477094-24477158)
chr4 (20-107)||(24470684-24470777)
chr4 (71-116)||(24421387-24421432)
chr4 (71-116)||(24470291-24470336)
chr4 (20-122)||(24477419-24477527)
chr4 (71-116)||(24477620-24477665)
chr4 (71-116)||(24421339-24421384)
chr4 (71-116)||(24470531-24470576)
chr4 (20-52)||(24421495-24421527)
chr4 (20-52)||(24470196-24470228)
[»] scaffold0879 (2 HSPs)
scaffold0879 (20-114)||(4536-4636)
scaffold0879 (20-98)||(4750-4828)
[»] scaffold1918 (1 HSPs)
scaffold1918 (116-150)||(127-161)
[»] chr2 (1 HSPs)
chr2 (40-77)||(41899847-41899884)


Alignment Details
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 24470926 - 24470821
Alignment:
Q  14 taaacgtatggaggtggtggggatggagaaggtggaggttgtgacttgtaaacatat-----ggaggagagggagatggaggtggtggtgacttgtaaac 108  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||     |||||||||||||||||||| ||||||||||| || ||    
T  24470926 taaacgtatggaggtggtggggatggagacggtggaggtggtgacttgtaaacatatggtggggaggagagggagatggaggaggtggtgacttatatac 24470827  T
Q  109 atatgg 114  Q
    ||||||    
T  24470826 atatgg 24470821  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 24420700 - 24420799
Alignment:
Q  14 taaacgtatggaggtggtggggatggagaaggtggaggttgtgacttgtaaacatat------ggaggagagggagatggaggtggtggtgacttgtaaa 107  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||      |||||||||||||||||||||||||| ||||| ||||    
T  24420700 taaacgtatggaggtggtggggatggagacggtggaggtggtgacttgtaaacatatggtgggggaggagagggagatggaggtggtggcgacttataaa 24420799  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 24421138 - 24421235
Alignment:
Q  20 tatggaggtggtggggatggagaaggtggaggttgtgacttgtaaacatatggagga------gagggagatggaggtggtggtgacttgtaaacata 111  Q
    |||||||||||||| ||||| || ||||| ||| |||||||||| ||||||||||||      || || |||||||||||||||||||||||||||||    
T  24421138 tatggaggtggtggagatggggatggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgtaaacata 24421235  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 24420946 - 24421024
Alignment:
Q  20 tatggaggtggtggggatggagaaggtggaggttgtgacttgtaaacatatggaggagagggagatggaggtggtggtg 98  Q
    |||||||||||||| ||||| || ||||||||| |||||||||| |||||||| |||| ||| ||||||| ||| ||||    
T  24420946 tatggaggtggtggagatggggatggtggaggtggtgacttgtagacatatggtggagggggggatggagatgggggtg 24421024  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 24477094 - 24477158
Alignment:
Q  13 gtaaacgtatggaggtggtggggatggagaaggtggaggttgtgacttgtaaacatatggaggag 77  Q
    |||||| ||||||||||||||||||||||| || |||||| ||| ||| || |||||||||||||    
T  24477094 gtaaacatatggaggtggtggggatggagatggaggaggtggtgccttatagacatatggaggag 24477158  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 24470777 - 24470684
Alignment:
Q  20 tatggaggtggtggggatggagaaggtggaggttgtgacttgtaaacatatggagga------gagggagatggaggtggtggtgacttgtaaa 107  Q
    ||||| |||||||| ||||| || ||||||||| |||||||||| ||||||||||||      || ||||||||||||||||| ||||| ||||    
T  24470777 tatggtggtggtggagatggggatggtggaggtggtgacttgtagacatatggaggaggaggtgaaggagatggaggtggtggcgacttataaa 24470684  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 24421387 - 24421432
Alignment:
Q  71 ggaggagagggagatggaggtggtggtgacttgtaaacatatggag 116  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||    
T  24421387 ggaggagagggagatggaggtggtggggacttgtacacatacggag 24421432  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 24470336 - 24470291
Alignment:
Q  71 ggaggagagggagatggaggtggtggtgacttgtaaacatatggag 116  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||    
T  24470336 ggaggagagggagatggaggtggtggggacttgtacacatacggag 24470291  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 24477419 - 24477527
Alignment:
Q  20 tatggaggtggtggggatggagaaggtggaggttgtgacttgtaaacatatgg------aggagagggagatggaggtggtggtgacttgtaaacatatg 113  Q
    |||||||||||||| |||||||||||| ||||  |   |||||| ||||||||      ||| || ||||||||||| |||||||||||||| |||||||    
T  24477419 tatggaggtggtggtgatggagaaggtagaggaggactcttgtagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgtagacatatg 24477518  T
Q  114 gagatggag 122  Q
    ||| |||||    
T  24477519 gaggtggag 24477527  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 24477620 - 24477665
Alignment:
Q  71 ggaggagagggagatggaggtggtggtgacttgtaaacatatggag 116  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||||    
T  24477620 ggaggagagagagatggaggtggtggggacttgtacacatatggag 24477665  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 24421339 - 24421384
Alignment:
Q  71 ggaggagagggagatggaggtggtggtgacttgtaaacatatggag 116  Q
    ||||| || ||||||||||| |||||||||||||| ||||||||||    
T  24421339 ggaggtgaaggagatggaggaggtggtgacttgtagacatatggag 24421384  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 24470576 - 24470531
Alignment:
Q  71 ggaggagagggagatggaggtggtggtgacttgtaaacatatggag 116  Q
    ||||| || ||||||||||| |||||||||||||| ||||||||||    
T  24470576 ggaggtgaaggagatggaggaggtggtgacttgtagacatatggag 24470531  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 24421495 - 24421527
Alignment:
Q  20 tatggaggtggtggggatggagaaggtggaggt 52  Q
    |||||||||||||| ||||||||||||||||||    
T  24421495 tatggaggtggtggcgatggagaaggtggaggt 24421527  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 24470228 - 24470196
Alignment:
Q  20 tatggaggtggtggggatggagaaggtggaggt 52  Q
    |||||||||||||| ||||||||||||||||||    
T  24470228 tatggaggtggtggcgatggagaaggtggaggt 24470196  T

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Target: scaffold0879 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 4636 - 4536
Alignment:
Q  20 tatggaggtggtggggatggagaaggtggaggttgtgacttgtaaacatatggagga------gagggagatggaggtggtggtgacttgtaaacatatg 113  Q
    |||||||||||||| ||||| || ||||| ||| |||||||||| ||||||||||||      || || |||||||||||||||||||||||||||||||    
T  4636 tatggaggtggtggagatggggatggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgtaaacatatg 4537  T
Q  114 g 114  Q
    |    
T  4536 g 4536  T

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Target: scaffold0879; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 4828 - 4750
Alignment:
Q  20 tatggaggtggtggggatggagaaggtggaggttgtgacttgtaaacatatggaggagagggagatggaggtggtggtg 98  Q
    |||||||||||||| ||||| || ||||||||| |||||||||| |||||||| |||| ||| ||||||| ||| ||||    
T  4828 tatggaggtggtggagatggggatggtggaggtggtgacttgtagacatatggtggagggggggatggagatgggggtg 4750  T

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Target: scaffold1918 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 127 - 161
Alignment:
Q  116 gatggagatggaggaggtggtgacttgtacacata 150  Q
    ||||| |||||||||||||||||||||||||||||    
T  127 gatggggatggaggaggtggtgacttgtacacata 161  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 41899847 - 41899884
Alignment:
Q  40 agaaggtggaggttgtgacttgtaaacatatggaggag 77  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  41899847 agaaggtggaggtggagacttgtaaacatatggaggag 41899884  T

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