View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_62 (Length: 222)
Name: NF3219_low_62
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 37414284 - 37414378
Alignment:
| Q |
13 |
tagattatactgcaaggttaaatggcttatgaaaaaactgttttggaaatttggagtcgaaaatgcgtcgtatatagaagctgattttgttatga |
107 |
Q |
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| T |
37414284 |
tagattatgctgcaaggttaaatggcttatgaaaaaactgttttggaaatttggagtcgaaaatgcgtcgtatatagaagctgattttgttatga |
37414378 |
T |
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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 32018193 - 32018132
Alignment:
| Q |
144 |
acactctctttgatacacttcaatatgaatttgccacatgacacactctttttatttcattg |
205 |
Q |
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| T |
32018193 |
acactctctttgacacactccaatatgaatttgccacatgacacactctttttatttcattg |
32018132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 32017572 - 32017639
Alignment:
| Q |
115 |
atagagagatgctagggtcacactctctaacactctctttgatacacttcaatatgaatttgccacat |
182 |
Q |
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| T |
32017572 |
atagagaaaggctagcgtcacactctctaacactctctttgacacactccaataagaatttgccacat |
32017639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 37238020 - 37237988
Alignment:
| Q |
123 |
atgctagggtcacactctctaacactctctttg |
155 |
Q |
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| T |
37238020 |
atgctagggtcacaccctctaacactctctttg |
37237988 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 11590842 - 11590755
Alignment:
| Q |
118 |
gagagatgctagggtcacactctctaacactctc-tttgatacacttcaatatgaatttgccacatgacacactctttttatttcatt |
204 |
Q |
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| T |
11590842 |
gagaaatgctatggtcacactctctaacacactcttttgacacactccaatcataatttgccatctcatacactctttttatttcatt |
11590755 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 19750198 - 19750116
Alignment:
| Q |
123 |
atgctagggtcacactctctaacactctc-tttgatacacttcaatatgaatttgccacatgacacactctttttatttcatt |
204 |
Q |
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| T |
19750198 |
atgctatggtcacactctctaacacactcttttgacacactccaatcataatttgccatctcatacactctttttatttcatt |
19750116 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 30626472 - 30626536
Alignment:
| Q |
118 |
gagagatgctagggtcacactctctaacactctctttgatacacttcaatatgaatttgccacat |
182 |
Q |
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| T |
30626472 |
gagaaatgctagggtcacactccctaacacactctttaacacactccaataaaaattagccacat |
30626536 |
T |
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