View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_64 (Length: 218)
Name: NF3219_low_64
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_64 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 51112636 - 51112429
Alignment:
| Q |
11 |
cagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaaggccaaagaatatgctactaatgctgctcagaaggct |
110 |
Q |
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| T |
51112636 |
cagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaaggccaaagaatatgctactgatgctgctcagaaggct |
51112537 |
T |
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| Q |
111 |
gcacagaaagccaaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgcta |
210 |
Q |
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| T |
51112536 |
gcacagaaagccaaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaaaaccaaagagtatgcaggtgatgcta |
51112437 |
T |
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| Q |
211 |
cagagaag |
218 |
Q |
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|||||||| |
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| T |
51112436 |
cagagaag |
51112429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 51112460 - 51112405
Alignment:
| Q |
154 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgct |
209 |
Q |
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| T |
51112460 |
ccaaagagtatgcaggtgatgctacagagaagaccaaagagtatgcaggcgatgct |
51112405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 51112096 - 51112028
Alignment:
| Q |
125 |
agaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaaga |
193 |
Q |
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| T |
51112096 |
agaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaaga |
51112028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 51112427 - 51112370
Alignment:
| Q |
154 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgctac |
211 |
Q |
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| T |
51112427 |
ccaaagagtatgcaggcgatgctgcacagaaaaccaaagactatgctggtggtgctac |
51112370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 51112013 - 51111958
Alignment:
| Q |
154 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgct |
209 |
Q |
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| T |
51112013 |
ccaaagactatgctggtgaagctgcacaaaaagccaaagattatgcaggtgatgct |
51111958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 51112360 - 51112301
Alignment:
| Q |
122 |
caaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcaca |
181 |
Q |
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| T |
51112360 |
caaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtgatgctgcaca |
51112301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 51112280 - 51112210
Alignment:
| Q |
148 |
acaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaagagtatgcaggtgatgctacagagaag |
218 |
Q |
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| T |
51112280 |
acaagaccaaagattatgcaggtgatgcagcagagaagaccaaagattatggaagtgatgctgcacagaag |
51112210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 51111939 - 51111874
Alignment:
| Q |
129 |
tatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaagag |
194 |
Q |
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| T |
51111939 |
tatgccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgctcaaaaaaccaaagag |
51111874 |
T |
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