View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_low_7 (Length: 490)
Name: NF3219_low_7
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 12 - 473
Target Start/End: Original strand, 32735644 - 32736101
Alignment:
| Q |
12 |
atgaacccaagaaagccctaaaatcctaaccgtgcgcaatcttttctgaaaatgacagagatatacatcagcttgcaactattaagttaagtcccatttg |
111 |
Q |
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| T |
32735644 |
atgaacccaagaaagccctaaaatcctaaccgtgcgcaatcttttctgaaaatgacaga--tatacatcagcttacaactattaagttaagtcccatttg |
32735741 |
T |
|
| Q |
112 |
ttatatgatcatgccaagagctagcactaaataattggttacaactcacgtatgagattgtgagaatacaatagtagcaattatatgtgttaataaagtc |
211 |
Q |
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| T |
32735742 |
ttatatgatcacgccaagagctagcactaaataattggttacaactcatgtatgagattgtgagaatacaatagtagcaattatatgtattaataaagtc |
32735841 |
T |
|
| Q |
212 |
aacggttgatttgatgtgagtgacttatgggattatcttagccaataaagcgttgaaagagttatctaatccaatggccggcatgtttctcaaaaccagg |
311 |
Q |
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| T |
32735842 |
aacggttgatttgatgtgagtgacttatgggattatcttagccaataaagcgttgaaagagttatctaatccaatggccggcatgtttctcaaaaccagg |
32735941 |
T |
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| Q |
312 |
cagtctcatttttgagaggcagtttccccttttatgaggcataaccccattagggcggcaaacaatactggtcattaatgaggttgttaatatgtctatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32735942 |
cagtctcatttttgagaggcagtttccccttttatgaggcataaccccattagggcggcaaacaatactggtcattaatgaggttgttaatatgtctatt |
32736041 |
T |
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| Q |
412 |
tagtaatctcacgttagttttagttattattcagtctagaatattgtatgtgctatgtatat |
473 |
Q |
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| T |
32736042 |
tagtaatctcacgttag-gttagttattattcagtctagaata-tgtatgtgccatgtatat |
32736101 |
T |
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