View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3220_high_11 (Length: 250)

Name: NF3220_high_11
Description: NF3220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3220_high_11
NF3220_high_11
[»] chr1 (3 HSPs)
chr1 (1-245)||(3015957-3016201)
chr1 (163-245)||(28083934-28084017)
chr1 (116-234)||(30220267-30220385)
[»] chr8 (1 HSPs)
chr8 (122-233)||(41318837-41318948)
[»] chr5 (3 HSPs)
chr5 (164-234)||(14299287-14299358)
chr5 (93-145)||(5468661-5468713)
chr5 (201-245)||(6951351-6951395)
[»] chr4 (2 HSPs)
chr4 (98-171)||(43075955-43076027)
chr4 (185-235)||(29779110-29779161)
[»] chr3 (2 HSPs)
chr3 (185-240)||(41115413-41115469)
chr3 (187-233)||(43668239-43668285)
[»] chr2 (1 HSPs)
chr2 (185-240)||(22535976-22536032)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 3015957 - 3016201
Alignment:
Q  1 cttcgtcgataaccatgattctagcatatttaccgtgataccaaatatatgcaaaattgattatggagggtgcagaatggattcataatcctattttgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3015957 cttcgtcgataaccatgattctagcatatttaccgtgataccaaatatatgcaaaattgattatggagggcgcagaatggattcataatcctattttgtg 3016056  T
Q  101 tatgtttggttctgcttttagagaggtcaaaattgattcttgagggtgcaaaatttattataacatatttggttgttttttaacagaattgattttgctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3016057 tatgtttggttctgcttttagagaggtcaaaattgattcttgagggtgcaaaatttattataacatatttggttgttttttaatagaattgattttgctt 3016156  T
Q  201 tataattgattctacttgaacttagaatttgtagcctttgcttct 245  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  3016157 tataattgattctacttgaacttagaatttgtagcttttgattct 3016201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 28084017 - 28083934
Alignment:
Q  163 acatatttggttgttttttaacagaattgattttg-ctttataattgattctacttgaacttagaatttgtagcctttgcttct 245  Q
    |||||||||||||||||  |  ||||||||||||| |||  ||||||||||||||||||  ||||||||||||| |||| ||||    
T  28084017 acatatttggttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattct 28083934  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 30220385 - 30220267
Alignment:
Q  116 ttttagagaggtcaaaattgattcttgagggtgcaaaatttattataacatatttggttgttttttaacagaattgattttgctt-tataattgattcta 214  Q
    |||||||||| |||||| ||||||| |||| || | |||| ||||||  || ||||| || |||  |  |||||||||||||||| ||||||||||||||    
T  30220385 ttttagagag-tcaaaagtgattctagaggttgtataattgattatatgatgtttggatgatttaaagtagaattgattttgcttgtataattgattcta 30220287  T
Q  215 cttgaacttagaatttgtag 234  Q
    ||||||  || |||||||||    
T  30220286 cttgaagctataatttgtag 30220267  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 41318948 - 41318837
Alignment:
Q  122 agaggtcaaaattgattcttgagggtgcaaaatttattataacatatttggttgttttttaacagaattgattttgc-tttataattgattctacttgaa 220  Q
    ||||| ||||||||||| |||| |||| | |||| ||| |||||||||||||||  ||  || |||||| ||||||| |||| |||||||||||||||||    
T  41318948 agaggacaaaattgatt-ttgaaggtggagaattaattctaacatatttggttgccttcgaatagaatttattttgcctttaaaattgattctacttgaa 41318850  T
Q  221 cttagaatttgta 233  Q
     ||||||||||||    
T  41318849 gttagaatttgta 41318837  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 14299287 - 14299358
Alignment:
Q  164 catatttggttgttttttaacagaattgattttgcttt-ataattgattctacttgaacttagaatttgtag 234  Q
    ||||||||||||||||  || | ||||||||||||||| | ||||||||||||||||| |||| ||||||||    
T  14299287 catatttggttgttttcgaataaaattgattttgcttttaaaattgattctacttgaagttaggatttgtag 14299358  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 5468661 - 5468713
Alignment:
Q  93 attttgtgtatgtttggttctgcttttagagaggtcaaaattgattcttgagg 145  Q
    ||||||||||||||||||||  |||||| || ||||| |||||||||| ||||    
T  5468661 attttgtgtatgtttggttccacttttaaaggggtcataattgattctagagg 5468713  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 6951395 - 6951351
Alignment:
Q  201 tataattgattctacttgaacttagaatttgtagcctttgcttct 245  Q
    |||||||||||||||||||| |||| ||||||||| |||| ||||    
T  6951395 tataattgattctacttgaagttaggatttgtagcttttgattct 6951351  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 43075955 - 43076027
Alignment:
Q  98 gtgtatgtttggttctgcttttagagaggtcaaaattgattcttgagggtgcaaaatttattataacatatttg 171  Q
    |||||||||||||||||||||| |||  | ||||||||||||| || |||||| |||| ||| |||||||||||    
T  43075955 gtgtatgtttggttctgcttttggaggaggcaaaattgattctaga-ggtgcagaattgattttaacatatttg 43076027  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 29779161 - 29779110
Alignment:
Q  185 agaattgattttgctt-tataattgattctacttgaacttagaatttgtagc 235  Q
    |||||||||||||||| || |||||||||||||||||  |||||||||||||    
T  29779161 agaattgattttgcttgtagaattgattctacttgaagctagaatttgtagc 29779110  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 41115469 - 41115413
Alignment:
Q  185 agaattgattttgctt-tataattgattctacttgaacttagaatttgtagcctttg 240  Q
    |||||||||||||||| || |||||||||||||||||  ||||||||||||| ||||    
T  41115469 agaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttg 41115413  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 43668239 - 43668285
Alignment:
Q  187 aattgattttgctttataattgattctacttgaacttagaatttgta 233  Q
    ||||||||||| |||| | ||||||||||||||| ||||||||||||    
T  43668239 aattgattttgttttagagttgattctacttgaagttagaatttgta 43668285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 22535976 - 22536032
Alignment:
Q  185 agaattgattttgc-tttataattgattctacttgaacttagaatttgtagcctttg 240  Q
    |||||||||||||| |||| ||||||||||||||||| |||||||||| ||| ||||    
T  22535976 agaattgattttgcctttagaattgattctacttgaatttagaatttgaagcttttg 22536032  T

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