View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3220_high_4 (Length: 375)
Name: NF3220_high_4
Description: NF3220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3220_high_4 |
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| [»] scaffold0996 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 26 - 367
Target Start/End: Original strand, 513527 - 513865
Alignment:
| Q |
26 |
aggacacaatcaaatgtaatgttgatgccgcttccttcaataataactcaatcatggggtatggtatatgcttcagaaactcttcaggtgtactcattct |
125 |
Q |
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| T |
513527 |
aggacacaatcaaatgtaatgttgatgccgcttccttcaataataactcaatcatggggtatggtatatgcttcagaaactcttcaggtgtactcattct |
513626 |
T |
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| Q |
126 |
tggcaaatccggttattattattattccttcactacgatcctggaagctgaaaccatcggcttgttggaagctatcaaagaggcctaatcaaccggaatg |
225 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
513627 |
tggcaaatccggttat---tattattccttcactacggtcctggaagctgaaaccatcggcttgttggaagctatcaaagaggcctaatcaactggaatg |
513723 |
T |
|
| Q |
226 |
caagctgtcaggtttgaaactgattgcaaatcaatacctgatgcactttctgtcaataatatccctcaaaatgaatttggtgatctcatatctcaatgta |
325 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
513724 |
caagctgtcatgtttgaaactgattgcaaatcaatacctgatgcactttctgtcaataatatccctcaaaatgaatttggtgatctcatatctcaatgta |
513823 |
T |
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| Q |
326 |
agagcctcttgctcaatagacccaactttgtagtgtcctatg |
367 |
Q |
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| T |
513824 |
agagcctcttgctcaatagacccgactttgtagtgtcgtatg |
513865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 367
Target Start/End: Original strand, 31802141 - 31802478
Alignment:
| Q |
20 |
cgtcggaggacacaatcaaatgtaatgttgatgccgcttccttcaataataactcaatcatggggtatggtatatgcttcagaaactcttcaggtgtact |
119 |
Q |
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| T |
31802141 |
cgtcggagggcacaatcaaatgtaatgttgatgtcgcttcctttaataataactcaatcatggggtatg-------cttcagaaacacttcatgtgtact |
31802233 |
T |
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| Q |
120 |
cattcttggcaaatccggttattattattattccttcactacgatcctggaagctgaaaccatcggcttgttggaagctatcaaagaggcctaatcaacc |
219 |
Q |
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| T |
31802234 |
cattcttggcaaattcg---attattattattccttcactacggtcatggaagctgaaaccatcggcttgttggaagctatcaaagaggccatatcaact |
31802330 |
T |
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| Q |
220 |
ggaatgcaagctgtcaggtttgaaactgattgcaaatcaatacctgatgcactttctgtcaataatatccctcaaaatgaatttggtgatctcatatctc |
319 |
Q |
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| T |
31802331 |
ggaatgcacgctgtcaggtatgaaactgattgcaaatcaatacctgatgcaccttctgtcaataatatccctcaaaatgaatttggtgatctcacatctc |
31802430 |
T |
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| Q |
320 |
aatgtaagagcctcttgctcaatagacccaactttgtagtgtcctatg |
367 |
Q |
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| T |
31802431 |
gatgtaagagcctcttgctcaatagaaccggctttgtagtgtcgtatg |
31802478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 46599473 - 46599505
Alignment:
| Q |
25 |
gaggacacaatcaaatgtaatgttgatgccgct |
57 |
Q |
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| T |
46599473 |
gagggcacaatcaaatgtaatgttgatgccgct |
46599505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 24 - 367
Target Start/End: Complemental strand, 33978590 - 33978250
Alignment:
| Q |
24 |
ggaggacacaatcaaatgtaatgttgatgccgcttccttcaataataactcaatcatggggtatggtatatgcttcagaaactcttcaggtgtactcatt |
123 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | |
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| T |
33978590 |
ggagggcacaatcaaatgtaatgttgatgccgcttccttcaataataactcaatcatgaggtatggtatatgcttcagaaactcttcaggcgtactcact |
33978491 |
T |
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| Q |
124 |
cttggcaaatccggttattattattattccttcactacgatcctggaagctgaaaccatcggcttgttggaagctatc-aaagaggcctaatcaaccgga |
222 |
Q |
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| T |
33978490 |
cttggcaaatccggttattat---tattccttcactacggtcctggaagctgaaaccatcggcttgttgcaagctatcaaaagaggccatatcaactgga |
33978394 |
T |
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| Q |
223 |
atgcaagctgtcaggtttgaaactgattgcaaatcaatacctgatgcactttctgtcaataatatccctcaaaatgaatttggtgatctcatatctcaat |
322 |
Q |
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| T |
33978393 |
atgcaagctgtcaggtttgaaactgattgcaaatcaatacctgatgcactttctgtcaataatatccctcaaaatgaattt-gtgatctcatatctcaat |
33978295 |
T |
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| Q |
323 |
gtaagagcctcttgctcaatagacccaactttgtagtgtcctatg |
367 |
Q |
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| T |
33978294 |
gtaagagcctcttgctcaattgacccgactttgtagtgtcatatg |
33978250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 6352829 - 6352768
Alignment:
| Q |
31 |
acaatcaaatgtaatgttgatgccgcttccttcaataataactcaatcatggggtatggtat |
92 |
Q |
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| T |
6352829 |
acaatcaaatgcaatgttgatgccgcgtctttcaacaacaattcaattatggggtatggtat |
6352768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 258 - 367
Target Start/End: Original strand, 3914667 - 3914776
Alignment:
| Q |
258 |
aatacctgatgcactttctgtcaataatatccctcaaaatgaatttggtgatctcatatctcaatgtaagagcctcttgctcaatagacccaactttgta |
357 |
Q |
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|||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||| | || ||||||| |||||||| || |||||||| |
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| T |
3914667 |
aatacctgatgcactttcggtcaataatatctctcaaaataaatttggtgatgtcatatctcaatgcatgaacctcttgttcaatagatccgactttgta |
3914766 |
T |
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| Q |
358 |
gtgtcctatg |
367 |
Q |
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| T |
3914767 |
gtgtcgtatg |
3914776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 359
Target Start/End: Original strand, 44657187 - 44657382
Alignment:
| Q |
164 |
tcctggaagctgaaaccatcggcttgttggaagctatcaaagaggcctaatcaaccggaatgcaagctgtcaggtttgaaactgattgcaaatcaatacc |
263 |
Q |
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|||| |||||||||||||| ||||| ||| ||| ||||||| || | ||||| ||||||||| ||||| ||||||||| ||||||||||| || | |
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| T |
44657187 |
tcctagaagctgaaaccataggcttattgaaagttatcaaaatggtcatatcaaacggaatgcacgctgtattgtttgaaacggattgcaaatctctatc |
44657286 |
T |
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| Q |
264 |
tgatgcactttctgtcaataatatccctcaaaatgaatttggtgatctcatatctcaatgtaagagcctcttgctcaatagacccaactttgtagt |
359 |
Q |
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| T |
44657287 |
agatgctatttgttccacaaagattcttctaaatgaatttggagatctcgtctttcaatgtaaaagtctcttacttaatagatccgactttgtagt |
44657382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0996 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0996
Description:
Target: scaffold0996; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 1652 - 1616
Alignment:
| Q |
331 |
ctcttgctcaatagacccaactttgtagtgtcctatg |
367 |
Q |
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| T |
1652 |
ctcttgctcaatagacccgactttgtagtgtcgtatg |
1616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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