View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3220_high_5 (Length: 359)
Name: NF3220_high_5
Description: NF3220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3220_high_5 |
 | |
|
| [»] scaffold0062 (3 HSPs) |
| | |
|
| [»] scaffold0443 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0062 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 47886 - 48223
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47886 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
47985 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
47986 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
48085 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagcgcagatgaattggtaaatctctataataagttgcttaat |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48086 |
ggccaacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaat |
48185 |
T |
|
| Q |
306 |
gaatacggtactgatgttaaactcttgccaggagtcag |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48186 |
gaatacggtactgatgttaaactcttgccaggagtcag |
48223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 60425 - 60762
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
60425 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
60524 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
60525 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
60624 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagcgcagatgaattggtaaatctctataataagttgcttaat |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
60625 |
ggccaacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaat |
60724 |
T |
|
| Q |
306 |
gaatacggtactgatgttaaactcttgccaggagtcag |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60725 |
gaatacggtactgatgttaaactcttgccaggagtcag |
60762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 72544 - 72881
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
72544 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
72643 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
72644 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
72743 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagcgcagatgaattggtaaatctctataataagttgcttaat |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
72744 |
ggccaacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaat |
72843 |
T |
|
| Q |
306 |
gaatacggtactgatgttaaactcttgccaggagtcag |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72844 |
gaatacggtactgatgttaaactcttgccaggagtcag |
72881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 18691235 - 18691572
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18691235 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
18691334 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
18691335 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
18691434 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagcgcagatgaattggtaaatctctataataagttgcttaat |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691435 |
ggccaacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaat |
18691534 |
T |
|
| Q |
306 |
gaatacggtactgatgttaaactcttgccaggagtcag |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18691535 |
gaatacggtactgatgttaaactcttgccaggagtcag |
18691572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 15698974 - 15699311
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15698974 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
15699073 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
15699074 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
15699173 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagcgcagatgaattggtaaatctctataataagttgcttaat |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15699174 |
ggccaacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaat |
15699273 |
T |
|
| Q |
306 |
gaatacggtactgatgttaaactcttgccaggagtcag |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15699274 |
gaatacggtactgatgttaaactcttgccaggagtcag |
15699311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 15711513 - 15711850
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15711513 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
15711612 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
15711613 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
15711712 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagcgcagatgaattggtaaatctctataataagttgcttaat |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15711713 |
ggccaacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaat |
15711812 |
T |
|
| Q |
306 |
gaatacggtactgatgttaaactcttgccaggagtcag |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15711813 |
gaatacggtactgatgttaaactcttgccaggagtcag |
15711850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 15723991 - 15724328
Alignment:
| Q |
6 |
agcagcacagacgggtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcatag |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15723991 |
agcagcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcatag |
15724090 |
T |
|
| Q |
106 |
gagaactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcgtctcaaaccccactaccatcaattgtattg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
15724091 |
gagaactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattg |
15724190 |
T |
|
| Q |
206 |
ggccaacaaagagataattaactgggttgactacaagttctacaatcaggctgtgtccagcgcagatgaattggtaaatctctataataagttgcttaat |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15724191 |
ggccaacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaat |
15724290 |
T |
|
| Q |
306 |
gaatacggtactgatgttaaactcttgccaggagtcag |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15724291 |
gaatacggtactgatgttaaactcttgccaggagtcag |
15724328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 8901 - 8933
Alignment:
| Q |
35 |
cataattgatggtattgatattaactatgagta |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8901 |
cataattgatggtattgatattaactatgagta |
8933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University