View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3220_low_1 (Length: 715)
Name: NF3220_low_1
Description: NF3220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3220_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 4e-74; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 362 - 591
Target Start/End: Original strand, 26246712 - 26246949
Alignment:
| Q |
362 |
gaaactgtcttcctgaccctctttatcccctgcagagaccatttttgtctagtgctacttttcctttccatcctt--------------gtccagttttc |
447 |
Q |
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| T |
26246712 |
gaaactgtcttcgtgaccctctttatcccctgcagagaccatttttgtctagtgctacttttcctttccatcctttcttgtccatctctgtccagttttc |
26246811 |
T |
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| Q |
448 |
cctcatctgtttcatccttattctccgtcacgaccaattcgtcctgttcttctatgttttctttgttaaccaaattgcttctacttctcatgttgctact |
547 |
Q |
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| T |
26246812 |
cc------gtttcatccttattctccctcacgaccaattcttcctgttcttctctgttttctttgttaaccaaattgcttctacttctcatgttgctact |
26246905 |
T |
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| Q |
548 |
agtgagggatttgctgccactcactctcctgtccttagctatag |
591 |
Q |
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| T |
26246906 |
agtccgggatttcctgctactcactctcctgtccttagctatag |
26246949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 26246234 - 26246379
Alignment:
| Q |
2 |
agagggagatcttcaagcgatttaaga----attgagtccttcgggttaggaagtttgctgaccttcaaagttcttgatagttctttcctttgtaatcga |
97 |
Q |
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| T |
26246234 |
agagggagatcttcaagcgatttaagagagaattgagtccttcgggttaggaagtttgctgaccttcaaagttcttcatcgttctttcctttgtaattga |
26246333 |
T |
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| Q |
98 |
gtcatatcatatccctatttatttctaataaaataccagattcctatcttc |
148 |
Q |
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| T |
26246334 |
g-----tcatatccctatttatttctaataaaataccagattcctatcttc |
26246379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 26246549 - 26246612
Alignment:
| Q |
199 |
tttctgctcgcaggttagaagaagacatatttatccatgcgggtcataaagaaaacccattttg |
262 |
Q |
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| T |
26246549 |
tttctgctcgcaggttagaagaagacatgtttctccatgcgggtcataaagaaaacccattttg |
26246612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 26246461 - 26246495
Alignment:
| Q |
171 |
acctcagaaagagattcctatcttctgatttctgc |
205 |
Q |
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| T |
26246461 |
acctcagaaagagattcccatcttctgatttctgc |
26246495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 479 - 591
Target Start/End: Complemental strand, 5394856 - 5394744
Alignment:
| Q |
479 |
gaccaattcgtcctgttcttctatgttttctttgttaaccaaattgcttctacttctcatgttgctactagtgagggatttgctgccactcactctcctg |
578 |
Q |
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| T |
5394856 |
gaccaattcttcctgttcttctctgttttcattgttaaccaaatggcttcaaattctcacgttgctactggtgaggcatattctgctactcactctcccg |
5394757 |
T |
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| Q |
579 |
tccttagctatag |
591 |
Q |
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||||||||||||| |
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| T |
5394756 |
tccttagctatag |
5394744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 614 - 681
Target Start/End: Complemental strand, 5389656 - 5389589
Alignment:
| Q |
614 |
tggaaataggagtgattgtgtagaacttactgaaaaaagggaaagcaatgaagtggagggtgttgttg |
681 |
Q |
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| T |
5389656 |
tggaaataggagtgattgtatagaacttactgaaaaaagcgatagcagtgaagtggagggtgttgttg |
5389589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 614 - 681
Target Start/End: Complemental strand, 5394692 - 5394625
Alignment:
| Q |
614 |
tggaaataggagtgattgtgtagaacttactgaaaaaagggaaagcaatgaagtggagggtgttgttg |
681 |
Q |
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| T |
5394692 |
tggaaataggagtgattgtatagaacttgctgaaaaaagagaaagcagtgaagtggagggtgttgttg |
5394625 |
T |
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