View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3220_low_11 (Length: 255)
Name: NF3220_low_11
Description: NF3220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3220_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13484204 - 13484442
Alignment:
| Q |
1 |
agagagaggaaaaccaaagcagtgagtgagtgagtgttgattttgttgcttgtttgtcgtctttattcttccctttcattgttagctcgaaagaacttag |
100 |
Q |
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| T |
13484204 |
agagagaggaaaagcaaagcagtgagtgagtgagtgttgattttgttgcttgtttgtcgtctttattcttccctttcattgttagctcgaaagaacttag |
13484303 |
T |
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| Q |
101 |
accccacaaatgtgttaaaagatttgcattattttatgctactacctctttactccttcattcctcacgtatatctatacacatatactttcatgcaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13484304 |
accccacaaatgtgttaaaagatttgcattattttatgctactatctctttactccttcattcctcacgtatatctatacacatatactttcatgcaatc |
13484403 |
T |
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| Q |
201 |
ttattcttccctttgtgtaaaacgtatttactcaaattt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
13484404 |
ttattcttccctttgtgtaaaacgtatttactcaaattt |
13484442 |
T |
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