View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3220_low_3 (Length: 385)
Name: NF3220_low_3
Description: NF3220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3220_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 39748066 - 39748422
Alignment:
| Q |
12 |
acagaaagatgacaaaaattgatatgagataaaaagcagaagctttaataattcttgattcaagctgtatcatatttagcatgccaaagattctttcgga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39748066 |
acagaaagatgacaaaaattgatatgagataaaaagcagaagctttaataattcttgattcaagctgtatcatatttagcatgccaaagattctttcgga |
39748165 |
T |
|
| Q |
112 |
atgaacaaacatggtagcctgatttgtttcaatggtttcctataaagtacgaatattnnnnnnnnnnncattaaggatatatgtatgtatatcaaataaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
39748166 |
atgaacaaacatggtagcctgatttgtttcaatggtttcctataaagtacgaatatt-aaaaaaaaatcattaaggatata--tatgtatatcaaataaa |
39748262 |
T |
|
| Q |
212 |
cactcaaaaacaatagccaacaagaagttgcaaacctgagctgataatannnnnnncgagctttccattaattgatcatgaacttcttgcatttgttcct |
311 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39748263 |
cactcaaaaacaacagccaacaagaagttgcaaacctgagctgataatatttttttcgagctttccattaattgatcatgaacttcttgcatttgttcct |
39748362 |
T |
|
| Q |
312 |
gtcgccgtagaagctcttcatgctgcttttgcccatattcagcaaaatattgtagatttt |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39748363 |
gtcgccgtagaagctcttcatgctgcttttgcccatattcagcaaaatattgtagatttt |
39748422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 366
Target Start/End: Original strand, 27087524 - 27087617
Alignment:
| Q |
273 |
tttccattaattgatcatgaacttcttgcatttgttcctgtcgccgtagaagctcttcatgctgcttttgcccatattcagcaaaatattgtag |
366 |
Q |
| |
|
|||||||||| ||||||||| | ||||||| ||||| || || |||| ||||||||| || ||||| || |||||||||| |||||||||||| |
|
|
| T |
27087524 |
tttccattaaccgatcatgaagtccttgcatctgttcttgacgtcgtaaaagctcttcttgttgcttatgtccatattcagaaaaatattgtag |
27087617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 11632704 - 11632611
Alignment:
| Q |
273 |
tttccattaattgatcatgaacttcttgcatttgttcctgtcgccgtagaagctcttcatgctgcttttgcccatattcagcaaaatattgtag |
366 |
Q |
| |
|
|||||||||| ||||||||| | ||||||| ||||| || || |||| || ||||| || ||||| || ||||||||||||||||||||||| |
|
|
| T |
11632704 |
tttccattaaacgatcatgaattccttgcatctgttcttgacgtcgtaagagttcttcttgttgcttatgtccatattcagcaaaatattgtag |
11632611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University