View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3220_low_5 (Length: 372)
Name: NF3220_low_5
Description: NF3220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3220_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 7652043 - 7651712
Alignment:
| Q |
12 |
catcatcatcaaactcatcatcagtaaaagcatcatcctctttaggcaaattgaacttaacacctttcatatttggattttgatttggtggtggcatcat |
111 |
Q |
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| T |
7652043 |
catcatcatcaaactcatcatcagtaaaagcatcatcctctttaggcaaattgaccttaacacctttcatatttggattttgatttggtggtggcatcat |
7651944 |
T |
|
| Q |
112 |
catgttcatgtccttgaattgaggccccttaagatcttcaagtcctttcatctgctgaagttgttgcaactgttgttgaagctgttgttgaggattctgc |
211 |
Q |
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| T |
7651943 |
catgttcatgtccttgaattgagtccccttaagatcttcaagtcctttcatctgctgaagttgttg------------aagctgttgttgaggattctgc |
7651856 |
T |
|
| Q |
212 |
tcttgttgtccacctccctttggttggttttggttatttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaattt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7651855 |
tcttgttgtccacctccctttggttggttttggttatttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtgtcaattt |
7651756 |
T |
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| Q |
312 |
gaatgttcttcatctggtttgccatgttgttatggttgttattg |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7651755 |
gaatgttcttcatctggtttgccatgttgttatggttgttattg |
7651712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 7657439 - 7657089
Alignment:
| Q |
17 |
tcatcaaactcatcatcagtaaaagcatcatcctctttaggcaaattgaacttaacacctttcatatttggattttgatttggtggtggcatcatcatgt |
116 |
Q |
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| T |
7657439 |
tcatctaactcatcatcagaaaaatcatcatactcttcaggcaaattgaacttaacacctttcatatttgtattttgatttggtggtggcattttcatgt |
7657340 |
T |
|
| Q |
117 |
tcatgtccttgaattgaggccccttaagatcttcaagtcctttcatctgctgaagttgttgc---------aactgttgttgaa---gctgttgttgagg |
204 |
Q |
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|||||||||||||||||||| |||| |||||| ||| |||||| || || |||||||||||| |||||||| |||| ||||||||||||| |
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| T |
7657339 |
tcatgtccttgaattgaggcaccttcagatctccaaatcctttaatatgttgaagttgttgcagctgttgtaactgttgctgaagctgctgttgttgagg |
7657240 |
T |
|
| Q |
205 |
attctgctcttgttgtccacctccctttggttggttttggttatttataggatccttttgcccattgttgttattgttttctccaccaccttttccagtg |
304 |
Q |
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||| || ||||||| | ||| |||||||| || |||||||||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||| || |
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| T |
7657239 |
attttgtccttgttggctaccaccctttggctgattttggttatttccaggacccttttgccccttgttgttattgtttcctccaccaccttttccattg |
7657140 |
T |
|
| Q |
305 |
tcaatttgaatgttcttcatctggtttgccatgttgttatggttgttattg |
355 |
Q |
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||||| || ||||||||||| || |||| |||||||| |||||||||||| |
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| T |
7657139 |
tcaatatgcatgttcttcatttgatttggaatgttgttctggttgttattg |
7657089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 48539049 - 48539089
Alignment:
| Q |
155 |
cctttcatctgctgaagttgttgcaactgttgttgaagctg |
195 |
Q |
| |
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| T |
48539049 |
cctttcatctgttgaagttgttgtaactgttgttgaagctg |
48539089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 48573304 - 48573344
Alignment:
| Q |
155 |
cctttcatctgctgaagttgttgcaactgttgttgaagctg |
195 |
Q |
| |
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| T |
48573304 |
cctttcatctgttgaagttgttgtaactgttgttgaagctg |
48573344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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