View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3220_low_7 (Length: 357)
Name: NF3220_low_7
Description: NF3220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3220_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 1904138 - 1903810
Alignment:
| Q |
15 |
cttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgcccccttta |
114 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1904138 |
cttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgcccccttta |
1904039 |
T |
|
| Q |
115 |
accgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgaggtgtaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
1904038 |
accgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgaggtgcaaa |
1903939 |
T |
|
| Q |
215 |
ttgtttagaaatgatagatatttcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattacgtccagt |
314 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
1903938 |
ctgtttagaaat----gatatttcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattacgtccagt |
1903843 |
T |
|
| Q |
315 |
gactgatttgtcaagtgtcacaactcattcatc |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
1903842 |
gactgatttgtcaagtgtcacaactcattcatc |
1903810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 1908371 - 1908043
Alignment:
| Q |
15 |
cttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgcccccttta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1908371 |
cttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgcccccttta |
1908272 |
T |
|
| Q |
115 |
accgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatgtgtcatcaataaattacgattacgaggtgtaaa |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
1908271 |
accgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcctggggtgagaaatttgtcatcaataaattacgattacgaggtgcaaa |
1908172 |
T |
|
| Q |
215 |
ttgtttagaaatgatagatatttcaacacaaaattgatatcaaaaatcaacaaccactaagatgacacacaatccaaataagtgcttaattacgtccagt |
314 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
1908171 |
ctgtttagaaat----gatatttcaacacaaaattgatatcaaaagtcaacaaccaccaagatgacacacaattcaaataagtgtttaattacgtccagt |
1908076 |
T |
|
| Q |
315 |
gactgatttgtcaagtgtcacaactcattcatc |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
1908075 |
gactgatttgtcaagtgtcacaactcattcatc |
1908043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 1898933 - 1898780
Alignment:
| Q |
15 |
cttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgcccccttta |
114 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
1898933 |
cttccaacatgaagagtatcaccaagaaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgaggttacatagactgcccccttta |
1898834 |
T |
|
| Q |
115 |
accgaacagaccaggcacaaactgtattgcctatcaactttccgaaaattgcct |
168 |
Q |
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| ||||| | ||| |||||||||| | ||||||| |||||||| ||||| |||| |
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| T |
1898833 |
agcgaactgtccaagcacaaactgcaatgcctataaactttccaaaaatagcct |
1898780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 1888371 - 1888222
Alignment:
| Q |
15 |
cttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgcccccttta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||| || ||||||| |
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|
| T |
1888371 |
cttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgttacatagacagctcccttta |
1888272 |
T |
|
| Q |
115 |
accgaacagaccaggcacaaactgtattgcctatcaactttccgaaaatt |
164 |
Q |
| |
|
| || | ||||| ||| ||||| |||| ||||| || ||||| |||||| |
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|
| T |
1888271 |
aacgcattgaccatgcataaactatattccctattaattttcccaaaatt |
1888222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 1893221 - 1893124
Alignment:
| Q |
15 |
cttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgccccctt |
112 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||| || ||||||||||| ||||||||||| |||||||| |
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|
| T |
1893221 |
cttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggttacatagacagccccctt |
1893124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 1881071 - 1880971
Alignment:
| Q |
15 |
cttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgcccccttta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | ||| || |||||| |||||||| |||||||||||||||||||||||||| || ||||||| |
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| T |
1881071 |
cttccaacatgaagagtatcaccaaggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgttacatagacagctcccttta |
1880972 |
T |
|
| Q |
115 |
a |
115 |
Q |
| |
|
| |
|
|
| T |
1880971 |
a |
1880971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 1914251 - 1914151
Alignment:
| Q |
15 |
cttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaatgatgttacatagactgcccccttta |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| || || | | |||| ||||||||||| |||||||||||||| ||||||||||| |||||||||| |
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|
| T |
1914251 |
cttccaagatgaagagtatcaccaaggaatataactcccaaccaaacagagataacaatttgcagtggcttgaatgaggttacatagacagcccccttta |
1914152 |
T |
|
| Q |
115 |
a |
115 |
Q |
| |
|
| |
|
|
| T |
1914151 |
a |
1914151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 1898657 - 1898605
Alignment:
| Q |
281 |
acacaatccaaataagtgcttaattacgtccagtgactgatttgtcaagtgtc |
333 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
1898657 |
acacaattcaaatatgtgcttaattacgtcccgtgactgatttatcaagtgtc |
1898605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 1919237 - 1919164
Alignment:
| Q |
15 |
cttccaacatgaagagtatcaccaaggaacataacacctaagccagcagaaataacaatttgaagtggcttgaa |
88 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||| | || ||| |||||||||| |||||||||||| |
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|
| T |
1919237 |
cttccaatatgaagagtatcaccaaggaacaaaatacccatagcaacagcaataacaattgaaagtggcttgaa |
1919164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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