View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3220_low_8 (Length: 324)
Name: NF3220_low_8
Description: NF3220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3220_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 7652348 - 7652075
Alignment:
| Q |
1 |
attcttatttccatttttaccctctggcattccaccttgattctgactctgattatttccaccgtcgccaccaccacctttctttcctccattcccattt |
100 |
Q |
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| T |
7652348 |
attcttatttccatttttaccttctggcattccaccttgattctgaatctgattatttccaccttcgccaccaccacctttctttcctccattcccattt |
7652249 |
T |
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| Q |
101 |
ccaccagccaaggaatgaacttgaacaggcataggtactccaccacttccgccaccaccttttatttcaatgcctccaccatttcctgcactgatctttt |
200 |
Q |
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| T |
7652248 |
ccaccagccaaggaatgaacttgaacaggcataggtcctccaacacttccgccaccaccttttatttcaatgcctccaccatttcctgcactgatctttt |
7652149 |
T |
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| Q |
201 |
gagcattcatcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaaggattctctatt |
274 |
Q |
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| T |
7652148 |
gagcattcatcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaagtattctctatt |
7652075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 7657560 - 7657490
Alignment:
| Q |
196 |
cttttgagcattcatcatcatgtgagcaggaccattactccccatagatagtttcattttattcaaaggat |
266 |
Q |
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| T |
7657560 |
cttttgagcattcatcatcatgtgagcaggaccattaccccccataggtagtttcatcttattcaaaggat |
7657490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 7657695 - 7657639
Alignment:
| Q |
31 |
tccaccttgattctgactctgattatttccaccgtcgccaccaccacctttctttcc |
87 |
Q |
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| T |
7657695 |
tccaccttgattctgactctgattatttccgccaccaccaccaccacctttctttcc |
7657639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7657761 - 7657725
Alignment:
| Q |
1 |
attcttatttccatttttaccctctggcattccacct |
37 |
Q |
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| T |
7657761 |
attcttatttccatttttaccctctggcattccacct |
7657725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 48572896 - 48572934
Alignment:
| Q |
68 |
ccaccaccacctttctttcctccattcccatttccacca |
106 |
Q |
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| T |
48572896 |
ccaccaccacctttctttcctccattgccatttccacca |
48572934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 48538558 - 48538612
Alignment:
| Q |
48 |
tctgattatttccaccgtcgccaccaccacctttctttcctccattcccatttcc |
102 |
Q |
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| T |
48538558 |
tctgattatttcctccaccaccaccgccacctttctttcctccattgccatttcc |
48538612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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