View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3221_high_1 (Length: 426)
Name: NF3221_high_1
Description: NF3221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3221_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 4468278 - 4467863
Alignment:
| Q |
1 |
ccgacaaatttagatacttcgtacataatagtattatactaattacacagatactatttgacatactgttaagttattgcttcatttgatagtattgctt |
100 |
Q |
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| T |
4468278 |
ccgacaaatttagatacttcgtacataatagtattatactaattacacagatactatttgacatactgttaagttattgcttcatttgatattattgctt |
4468179 |
T |
|
| Q |
101 |
caattttatttatataatgttttctaatgtaaaatttgttgaaattgcagcaagaagatggaaactcttcaatcacgtgtggagaaggtggctgagaaaa |
200 |
Q |
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| T |
4468178 |
caattttatttatataatgttttctaatgtaaaatttgttgaaattgcagcaagaagatggaaactcttcaatcacgtgtggagaaggtggctgagaaaa |
4468079 |
T |
|
| Q |
201 |
ttttggctatcatattgaaaaatgttacaatgaaattagcaagtgatggtgatataattggtcatggaaatgaagttgggacactttgttgcatttacaa |
300 |
Q |
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| T |
4468078 |
ttttggctatcatattgaaaaatgttacaaagaaattagcaagtgatggtgatataattggtcatggaaatgaagttgggacactttgttgcatttacaa |
4467979 |
T |
|
| Q |
301 |
gcatcatcaagatattaataggaatgatcattgggttgattctttgaaatatgatgtgattagaatgctgattaggggaactgattactctcattcttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467978 |
gcatcatcaagatattaataggaatgatcattgggttgattctttgaaatatgatgtgattagaatgctgattaggggaactgattactctcattcttta |
4467879 |
T |
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| Q |
401 |
tgtttgcatgtctgtg |
416 |
Q |
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| T |
4467878 |
tgtttgcatgtgtgtg |
4467863 |
T |
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