View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3221_high_5 (Length: 296)
Name: NF3221_high_5
Description: NF3221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3221_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 36743614 - 36743349
Alignment:
| Q |
19 |
gtagaactcaccttgtgtataatttttaatgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtcttgct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743614 |
gtagaactcaccttgtgtataatttttaatgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtcttgct |
36743515 |
T |
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| Q |
119 |
gccaaggttggtaaaaaaggaatacgtttctccagaaagaactgatctccaacaaacccatttcccattcctaaaataataattaaaaagattagttagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36743514 |
gccaaggttggtaaaaaaggaatacgtttctccagaaagaactgatctccaacaaacccatttcccattcctaaaataataattaaaaagattagttagc |
36743415 |
T |
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| Q |
219 |
ttatgatttggtccgtcacaataaaaagacgttgaagcccgattatacaactcatgcaggggtctg |
284 |
Q |
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| T |
36743414 |
ttatgatttggtccgtcacaataaaaagacgttgaagcccgattatacaactcatgcaggggtctg |
36743349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 6458711 - 6458822
Alignment:
| Q |
21 |
agaactcaccttgtgtataatttttaatgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtcttgctgc |
120 |
Q |
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|||| ||| |||||||||||||| | ||||||||||| || ||||||||||||| | ||| ||||||| |||||||||||||||||||||||||| | |
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| T |
6458711 |
agaattcagcttgtgtataatttcttatgtaaaatgctccaggtattccaaaattagcatcatattcaaagaaaacactgaatgcatcttgtcttgctcc |
6458810 |
T |
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| Q |
121 |
caaggttggtaa |
132 |
Q |
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| T |
6458811 |
caaagttggtaa |
6458822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 6452533 - 6452644
Alignment:
| Q |
21 |
agaactcaccttgtgtataatttttaatgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtcttgctgc |
120 |
Q |
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|||||||| |||||||||||||| | ||||||||||| ||||| |||||||| | | ||| ||||||| ||| |||||||||||||||||||||| | |
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| T |
6452533 |
agaactcagcttgtgtataatttcttatgtaaaatgctcctgggattccaaagttagcatcatattcaaagaaaatactgaatgcatcttgtcttgctcc |
6452632 |
T |
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| Q |
121 |
caaggttggtaa |
132 |
Q |
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||| |||||||| |
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| T |
6452633 |
caaagttggtaa |
6452644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 9602815 - 9602731
Alignment:
| Q |
47 |
atgtaaaatgcacctggtattccaaaatcattatcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttggta |
131 |
Q |
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||||||||||| ||||| |||||||||||| |||||| ||||| | || ||| |||||||||||||||||| |||||||||||| |
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| T |
9602815 |
atgtaaaatgctcctgggattccaaaatcagcatcccaatcaaagtgaatactaaatgcatcttgtcttgctcccaaggttggta |
9602731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 32024078 - 32024163
Alignment:
| Q |
47 |
atgtaaaatgcacctggtattccaaaa----tcattatcccattcaaaataaacactgaatgcatcttgtcttgctgccaaggttg |
128 |
Q |
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||||||||||| ||||| ||||||||| ||||||||||| ||||| | || ||| ||||| |||||||||||| |||| |||| |
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| T |
32024078 |
atgtaaaatgctcctgggattccaaaatcattcattatcccaatcaaagtgaatactaaatgcttcttgtcttgctcccaaagttg |
32024163 |
T |
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