View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3221_low_2 (Length: 395)

Name: NF3221_low_2
Description: NF3221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3221_low_2
NF3221_low_2
[»] chr6 (9 HSPs)
chr6 (11-380)||(26811981-26812350)
chr6 (17-377)||(26618095-26618456)
chr6 (17-377)||(26724023-26724384)
chr6 (19-88)||(29843355-29843424)
chr6 (34-88)||(29845847-29845901)
chr6 (19-88)||(26849457-26849526)
chr6 (19-72)||(28140296-28140349)
chr6 (19-135)||(26937727-26937843)
chr6 (52-84)||(27576239-27576271)
[»] chr1 (1 HSPs)
chr1 (17-292)||(26136432-26136704)
[»] chr5 (1 HSPs)
chr5 (19-88)||(16691612-16691681)
[»] chr8 (1 HSPs)
chr8 (18-102)||(31905782-31905866)
[»] scaffold0237 (1 HSPs)
scaffold0237 (34-88)||(2052-2106)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 26812350 - 26811981
Alignment:
Q  11 cacagaccttcaaattgatcggcaatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttccacatatcccaatcatacaagctc 110  Q
    |||| ||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  26812350 cacaaaccatcaaattgatcagcaatcaaattataaagtgcacgagtaagtgtcgttttacccaatcctccacttccacatatcccaatcatacatgctc 26812251  T
Q  111 catcatcacagccaacatccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgat 210  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26812250 catcatcacacccaacatccagaagtgacattacatgcagcagtcgagactcaagtcccacaatagggtgatcagcaacttctaaaagaccacggttgat 26812151  T
Q  211 ctttttggaaatctctgtaactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatca 310  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26812150 ctttttggaaatctctgtaactatcttcttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatca 26812051  T
Q  311 caattacacccatatattgtgatgatgtgatattacaattcaaattgtttcaacgtacaatgaacaatct 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  26812050 caattacacccatatattgtgatgatgtgatattacaattcaaattgtttcaacatacaaagaacaatct 26811981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 26618456 - 26618095
Alignment:
Q  17 ccttcaaattgatcggcaatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttccacatatcccaatcatacaagctccatcat 116  Q
    |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||  | |||| ||    
T  26618456 ccttcaaattgatcagcaatcaaatcataaactgctcgagtaagtgtcgttttacccaatcctccacttccatatatcccaatcattcagacaccattat 26618357  T
Q  117 cacagccaacatccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttttt 216  Q
     | || ||| | ||||||| ||| ||||| | | ||||||||| |||||||| |||||  |||||||||||||||||||||||||||  |||||||| ||    
T  26618356 tatagacaaaaaccagaagcgactttacacgtagcagtcgagagtcaagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgtt 26618257  T
Q  217 ggaaatctctgtaactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatcacaatta 316  Q
      ||||||||||||||||||  ||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||| |    
T  26618256 ccaaatctctgtaactatcttcttaataaactcgtattcatattcatcttccctgcgcccaaccagacaagtttaagtaaatacatcagaatctcaatca 26618157  T
Q  317 cacccatatattgtgatgatg-tgatattacaattcaaattgtttcaacgtacaatgaacaa 377  Q
    || |||| ||||| ||||||| ||||||||  || |||||| ||||||| | ||| ||||||    
T  26618156 cagccatgtattgcgatgatgatgatattatgatacaaattttttcaacatgcaaagaacaa 26618095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 26724384 - 26724023
Alignment:
Q  17 ccttcaaattgatcggcaatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttccacatatcccaatcatacaagctccatcat 116  Q
    |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||  | |||| ||    
T  26724384 ccttcaaattgatcagcaatcaaatcataaactgctcgagtaagtgtcgttttacccaatcctccacttccatatatcccaatcattcagacaccattat 26724285  T
Q  117 cacagccaacatccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttttt 216  Q
     | || ||| | ||||||| ||| ||||| | | ||||||||| |||||||| |||||  |||||||||||||||||||||||||||  |||||||| ||    
T  26724284 tatagacaaaaaccagaagcgactttacacgtagcagtcgagagtcaagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgtt 26724185  T
Q  217 ggaaatctctgtaactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatcacaatta 316  Q
      ||||||||||||||||||  ||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||| |    
T  26724184 ccaaatctctgtaactatcttcttaataaactcgtattcatattcatcttccctgcgcccaaccagacaagtttaagtaaatacatcagaatctcaatca 26724085  T
Q  317 cacccatatattgtgatgatg-tgatattacaattcaaattgtttcaacgtacaatgaacaa 377  Q
    || |||| ||||| ||||||| ||||||||  || |||||| ||||||| | ||| ||||||    
T  26724084 cagccatgtattgcgatgatgatgatattatgatacaaattttttcaacatgcaaagaacaa 26724023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 29843355 - 29843424
Alignment:
Q  19 ttcaaattgatcggcaatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttcca 88  Q
    |||||||| ||| |||||||||||||||| |||||||| |||||| |||||||| ||||| ||| |||||    
T  29843355 ttcaaatttatcagcaatcaaattataaattgctcgagcaagtgttgttttacccaatccaccaattcca 29843424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 29845847 - 29845901
Alignment:
Q  34 aatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttcca 88  Q
    |||||||||||||| |||||||| |||||| |||||||| ||||| ||| |||||    
T  29845847 aatcaaattataaattgctcgagcaagtgttgttttacccaatccaccaattcca 29845901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 26849526 - 26849457
Alignment:
Q  19 ttcaaattgatcggcaatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttcca 88  Q
    |||||||||||| |||||| ||||||||| |||| ||| |||||| ||||| || | ||||||| |||||    
T  26849526 ttcaaattgatcagcaatcgaattataaactgcttgagcaagtgttgtttttcccattcctccagttcca 26849457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 28140349 - 28140296
Alignment:
Q  19 ttcaaattgatcggcaatcaaattataaagtgctcgagtaagtgtcgttttacc 72  Q
    |||||||||||||||||| |||||||||| |||| | | |||||| ||||||||    
T  28140349 ttcaaattgatcggcaataaaattataaattgcttgtgcaagtgttgttttacc 28140296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 26937843 - 26937727
Alignment:
Q  19 ttcaaattgatcggcaatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttccacatatcccaatcatacaagctccatcatca 118  Q
    ||||||||||||  ||||||||||||||| |||||| | |||||| | |||||| | ||| ||| | ||| | ||||| | ||||||  |||||||||||    
T  26937843 ttcaaattgatcaccaatcaaattataaattgctcgtgcaagtgttgatttaccaattccgccaatcccatagatccctaccatacatactccatcatca 26937744  T
Q  119 cagccaacatccagaag 135  Q
     | |||| || ||||||    
T  26937743 tatccaatattcagaag 26937727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 27576239 - 27576271
Alignment:
Q  52 tcgagtaagtgtcgttttacctaatcctccact 84  Q
    ||||||||||||||||||||| |||||||||||    
T  27576239 tcgagtaagtgtcgttttacccaatcctccact 27576271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 26136704 - 26136432
Alignment:
Q  17 ccttcaaattgatcggcaatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttccacatatcccaatcatacaagctccatcat 116  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||   |||||| ||    
T  26136704 ccttcaaattgatccgcaatcaaattataaactgctcgagtaagtgttgttttacctaatcctccacttccatatatcccaatcagaccgactccattat 26136605  T
Q  117 cacagccaacatccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttttt 216  Q
    ||||| ||||||| ||||||||| |||| |||| |||||||||||| ||   | |||| |||||||| ||||| | ||||||| ||||||||||||| ||    
T  26136604 cacagtcaacatctagaagtgactttacttgcagcagtcgagactcgag---cccaacggggtgatcggcaacatgtaaaagaacacggttgatcttgtt 26136508  T
Q  217 ggaaatctctgtaactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttga 292  Q
     |||||| ||||||||||||  ||||||||||||||||| ||| | |||||||||||||||| |||| ||||||||    
T  26136507 tgaaatcactgtaactatcttcttaataaactcatattcgtattcttctttcctgcgcccaaccagataagtttga 26136432  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 16691681 - 16691612
Alignment:
Q  19 ttcaaattgatcggcaatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttcca 88  Q
    |||||||||||| |||||||||||||||| |||||||| |||||| |||||||| | ||||||| |||||    
T  16691681 ttcaaattgatcagcaatcaaattataaattgctcgagcaagtgttgttttaccgattcctccaattcca 16691612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 31905866 - 31905782
Alignment:
Q  18 cttcaaattgatcggcaatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttccacatatcccaatcat 102  Q
    ||||||| ||||||||||||| ||||||||  ||  ||| |||||| ||||||||||  ||||||||||||   |||||||||||    
T  31905866 cttcaaagtgatcggcaatcagattataaacagccagagcaagtgttgttttacctatccctccacttccatggatcccaatcat 31905782  T

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Target: scaffold0237 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 2052 - 2106
Alignment:
Q  34 aatcaaattataaagtgctcgagtaagtgtcgttttacctaatcctccacttcca 88  Q
    |||||||||||||| |||||||| |||||| |||||||| ||||| ||| |||||    
T  2052 aatcaaattataaattgctcgagcaagtgttgttttacccaatccaccaattcca 2106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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