View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3221_low_4 (Length: 334)

Name: NF3221_low_4
Description: NF3221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3221_low_4
NF3221_low_4
[»] chr8 (3 HSPs)
chr8 (88-204)||(44574686-44574802)
chr8 (233-317)||(44574598-44574683)
chr8 (17-83)||(44574904-44574970)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 44574802 - 44574686
Alignment:
Q  88 taccaccagtagtctatttttctaatatttcaaaaataaaagtctgaagttagtaaaagtttgagtttgtagtctagaggaactaattttaagactatca 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574802 taccaccagtagtctatttttctaatatttcaaaaataaaagtctgaagttagtaaaagtttgagtttgtagtctagaggaactaattttaagactatca 44574703  T
Q  188 taaaaagttgtaaaaat 204  Q
    |||||||||||||||||    
T  44574702 taaaaagttgtaaaaat 44574686  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 44574683 - 44574598
Alignment:
Q  233 atacggacgaagttccttaatttaatttatgttcttgaaaaattaacct-ttttatcagattcatcgagaactttgggactcacat 317  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  44574683 atacggacgaagttccttaatttaatttatgttcttgaaatattaaccttttttatcagattcatcgagaactttgggactcacat 44574598  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 44574970 - 44574904
Alignment:
Q  17 cagagaatttgattgaacggagtcgtgcaacgttgatagttcaattattaaatcatccttttgttag 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574970 cagagaatttgattgaacggagtcgtgcaacgttgatagttcaattattaaatcatccttttgttag 44574904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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