View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3221_low_5 (Length: 322)
Name: NF3221_low_5
Description: NF3221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3221_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 35497135 - 35497346
Alignment:
| Q |
19 |
ggtatggtggtgttggcttcagacattaaaatgtctcacgatctcaaattcgattcttttagcggtgccaatttcggttcgttggttttagtttcttcaa |
118 |
Q |
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| T |
35497135 |
ggtatggtggtgttggcttcagacattagaatgtctcacggtctcaaattcgattcatttagcggtgccaatttcggttcgttggttttagtttcttcaa |
35497234 |
T |
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| Q |
119 |
cnnnnnnnn---tagtaatggaatgatctatatgttggtcacttatatttgcaggcaatatacgcttttatttgttagtggagacaagactgggaggtta |
215 |
Q |
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| T |
35497235 |
caaaaaaaaaaatagtaatggaatgatctatatgttggtcacttttatttgcaggcaatatacgcttttatttgttagtggagacaagactggaaggtta |
35497334 |
T |
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| Q |
216 |
atgaaatatgat |
227 |
Q |
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|||||||||||| |
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| T |
35497335 |
atgaaatatgat |
35497346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 137 - 306
Target Start/End: Original strand, 35490753 - 35490922
Alignment:
| Q |
137 |
aatgatctatatgttggtcacttatatttgcaggcaatatacgcttttatttgttagtggagacaagactgggaggttaatgaaatatgataagtctaca |
236 |
Q |
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|||||| ||||| ||| || ||| ||||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
35490753 |
aatgatttatatattgctcgcttttattttcaggcaatatacacttttacttgttagtggcgacaagactgggaggttaatgaaatatgataagtcaacc |
35490852 |
T |
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| Q |
237 |
aaagaagtggaggttttattaagagacctttcttttcctaatggtgttgctttaagcaaagatggttcat |
306 |
Q |
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| T |
35490853 |
aaagaagtgaaggtcttattaagaggccttgcttttcctaatggtgttgctttaagcaaagatggttcat |
35490922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 139 - 306
Target Start/End: Original strand, 35503590 - 35503757
Alignment:
| Q |
139 |
tgatctatatgttggtcacttatatttgcaggcaatatacgcttttatttgttagtggagacaagactgggaggttaatgaaatatgataagtctacaaa |
238 |
Q |
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|||| ||||||||||| |||| ||||| |||||||| || |||| || || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35503590 |
tgatttatatgttggttacttttatttacaggcaatttatgcttgtacttcttagtggagacaagactgggaggttaatgaaatatgataagtcaacaaa |
35503689 |
T |
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| Q |
239 |
agaagtggaggttttattaagagacctttcttttcctaatggtgttgctttaagcaaagatggttcat |
306 |
Q |
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| T |
35503690 |
agaagtgaaagtcttattaagtggccttgcttttcccaatggtgttgctttaagcaaagatggttcat |
35503757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 139 - 306
Target Start/End: Original strand, 35512222 - 35512389
Alignment:
| Q |
139 |
tgatctatatgttggtcacttatatttgcaggcaatatacgcttttatttgttagtggagacaagactgggaggttaatgaaatatgataagtctacaaa |
238 |
Q |
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||||||||||||||||||||| | | ||||||||| ||| |||| || | ||||||||||||||||||| ||||||||||||| |||||||| | || |
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| T |
35512222 |
tgatctatatgttggtcacttttgtctgcaggcaacatatgcttgtaactcttagtggagacaagactggacggttaatgaaatacgataagtcgagtaa |
35512321 |
T |
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| Q |
239 |
agaagtggaggttttattaagagacctttcttttcctaatggtgttgctttaagcaaagatggttcat |
306 |
Q |
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| T |
35512322 |
agaagtaaaggtcttattaagtggccttttttttcccaatggtgttgctttaagcaaagatggttcat |
35512389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 40161260 - 40161426
Alignment:
| Q |
137 |
aatgatctatatgttggtcacttatatttgcaggcaatatacgcttttatttgttagtggagacaagactgggaggttaatgaaatatgataagtctaca |
236 |
Q |
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|||||||||||||||||||| || | |||| |||||| | |||||||| || | ||||||||||| ||||| |||||||||||||||| ||||| ||| |
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| T |
40161260 |
aatgatctatatgttggtcatttttgtttgtaggcaaattccgcttttacttctaagtggagacaaaactggaaggttaatgaaatatgtgaagtcaaca |
40161359 |
T |
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| Q |
237 |
aaagaagtggaggttttattaagagacctttcttttcctaatggtgttgctttaagcaaagatggtt |
303 |
Q |
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||||||||| |||| |||||||| | |||| || ||||||||||||| |||||||||||| |||| |
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| T |
40161360 |
aaagaagtgaaggtcttattaagtggccttaattatcctaatggtgtttgtttaagcaaagacggtt |
40161426 |
T |
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