View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_100 (Length: 255)

Name: NF3223_high_100
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_100
NF3223_high_100
[»] chr1 (5 HSPs)
chr1 (1-238)||(29453563-29453800)
chr1 (17-237)||(29443596-29443825)
chr1 (9-220)||(29468047-29468273)
chr1 (1-100)||(29423049-29423148)
chr1 (144-237)||(29422941-29423034)
[»] chr2 (36 HSPs)
chr2 (73-237)||(9315647-9315809)
chr2 (114-237)||(11987865-11987989)
chr2 (114-237)||(12012927-12013051)
chr2 (59-201)||(10371503-10371644)
chr2 (71-231)||(9284540-9284703)
chr2 (71-222)||(9294990-9295144)
chr2 (101-237)||(9320599-9320736)
chr2 (70-237)||(9364245-9364409)
chr2 (59-237)||(10347401-10347571)
chr2 (132-237)||(12019285-12019388)
chr2 (149-237)||(9291566-9291655)
chr2 (101-227)||(9061545-9061675)
chr2 (101-237)||(9328228-9328355)
chr2 (185-237)||(12006543-12006595)
chr2 (152-227)||(9274200-9274276)
chr2 (142-229)||(8573934-8574024)
chr2 (103-216)||(9272296-9272410)
chr2 (9-51)||(9284457-9284499)
chr2 (1-51)||(12012808-12012858)
chr2 (2-51)||(11987747-11987796)
chr2 (181-237)||(10352738-10352794)
chr2 (1-48)||(12019147-12019194)
chr2 (53-237)||(9065937-9066135)
chr2 (9-51)||(9315852-9315894)
chr2 (12-51)||(10347594-10347633)
chr2 (12-51)||(10352942-10352981)
chr2 (9-51)||(9291755-9291797)
chr2 (13-51)||(9320815-9320853)
chr2 (1-51)||(12006377-12006427)
chr2 (10-51)||(8573794-8573835)
chr2 (81-130)||(9291655-9291704)
chr2 (60-137)||(10335589-10335665)
chr2 (9-45)||(9364467-9364503)
chr2 (12-48)||(10335692-10335728)
chr2 (182-226)||(10341038-10341082)
chr2 (182-237)||(19393258-19393318)
[»] scaffold0667 (2 HSPs)
scaffold0667 (103-237)||(4073-4208)
scaffold0667 (10-48)||(4289-4327)
[»] chr3 (1 HSPs)
chr3 (101-237)||(37462098-37462236)
[»] chr8 (2 HSPs)
chr8 (67-237)||(41967066-41967236)
chr8 (9-51)||(41966975-41967017)
[»] chr4 (1 HSPs)
chr4 (181-236)||(26574525-26574580)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29453563 - 29453800
Alignment:
Q  1 tttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcatacaagcaagagaaggtactccttatttattatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29453563 tttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaattatacaagcaagagaaggtactccttatttattatc 29453662  T
Q  101 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaagcaaattgaattcttattata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29453663 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaagtaaattgaattcttattata 29453762  T
Q  201 gaacaaggattctctaattactttgaagtctctaccta 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29453763 gaacaaggattctctaattactttgaagtctctaccta 29453800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 29443596 - 29443825
Alignment:
Q  17 atttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcatacaagcaagagaaggtactccttatttattatctgagtttttgctctgt 116  Q
    |||||||||||||||||||| | |||||| ||||||||||| |||||||| ||||||||||||||||||| |||||| |||| |||||||||| || |||    
T  29443596 atttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgt 29443695  T
Q  117 ataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag--caaat-------tgaattcttattatagaacaag 207  Q
    |||||||||| ||| |||||| || ||||||||||||||||  |||||||||  ||||||||||  |||||       ||||||||||| |||| |||||    
T  29443696 ataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaag 29443795  T
Q  208 gattctctaattactttgaagtctctacct 237  Q
    ||||||||||||| ||||||||||||||||    
T  29443796 gattctctaattattttgaagtctctacct 29443825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 29468047 - 29468273
Alignment:
Q  9 aagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcatacaagcaagagaaggtactccttatttattatctgagtttt 108  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||  ||||||||||||||||||| |||||| ||| ||||||||||    
T  29468047 aagctatgatttgtgttggaagtcttgtaccaccttccttccctaggaacgagaatcgcacaagcaagagaaggtacttcttattgattgtctgagtttt 29468146  T
Q  109 t---------gctctgtataagttaatttca--gttcaatagatccatcatatgatat-----atgcagttaaactttatgttaaaag--caaattgaat 190  Q
    |         | | ||||||||||||| |||  ||| ||| || | ||||||||||||     ||||||||||||| |  ||||||||  ||||||||||    
T  29468147 ttgagtttttgttatgtataagttaatatcacagtt-aatggacctatcatatgatatgatatatgcagttaaactct--gttaaaaggtcaaattgaat 29468243  T
Q  191 tcttattatagaacaaggattctctaatta 220  Q
    ||||||||||| |||| |||||||||||||    
T  29468244 tcttattataggacaatgattctctaatta 29468273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 29423148 - 29423049
Alignment:
Q  1 tttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaatcatacaagcaagagaaggtactccttatttattatc 100  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||||| ||||| |||||||  ||||||||||||||||||| |||||| ||||||    
T  29423148 tttcgatcaagccatgatttgtgttggaagtcttgtatcaccttccttccctaggaaggagaatcgcacaagcaagagaaggtacttcttattgattatc 29423049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 29423034 - 29422941
Alignment:
Q  144 atcatatgatatatgcagttaaactttatgttaaaag--caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 237  Q
    ||||||||||||||  ||||||||| |  ||||||||  ||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||||    
T  29423034 atcatatgatatatctagttaaactct--gttaaaaggtcaaattgaattcttattatatgacaatgattctctaattattttgaagtctctacct 29422941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 9315809 - 9315647
Alignment:
Q  73 caagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttat 172  Q
    ||||||||||||||   ||| |||||| |||||||||||| ||||||||||||| |||||||||| || ||||||||||||||| | ||||||||| |||    
T  9315809 caagagaaggtact---tatatattatttgagtttttgctatgtataagttaatgtcagttcaatggacccatcatatgatataagtagttaaactctat 9315713  T
Q  173 gttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 237  Q
    | |||| | ||||||||||||||||||||| |||||||||| ||||||||||| || |||||||||    
T  9315712 gctaaaggtcaaattgaattcttattataggacaaggattccctaattactttaaattctctacct 9315647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 11987865 - 11987989
Alignment:
Q  114 tgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattc 212  Q
    ||||||||||||| ||| |||||| || ||||||| ||||||||| ||||||||||||||||||| | |||||||||||| |||||||| |||||||||     
T  11987865 tgtataagttaatatcaattcaatggacccatcatgtgatatatgtagttaaactttatgttaaaggtcaaattgaattcctattataggacaaggattt 11987964  T
Q  213 tctaattactttgaagtctctacct 237  Q
    |||||||||||||||||||||||||    
T  11987965 tctaattactttgaagtctctacct 11987989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 12012927 - 12013051
Alignment:
Q  114 tgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattc 212  Q
    ||||||||||||| ||| |||||| || ||||||||||||||||| ||||| |||  |||||||| | ||||||||||||||||||||| ||||||||||    
T  12012927 tgtataagttaatatcaattcaatggacccatcatatgatatatgtagttagactccatgttaaaggtcaaattgaattcttattataggacaaggattc 12013026  T
Q  213 tctaattactttgaagtctctacct 237  Q
    |||||||||||||||||||||||||    
T  12013027 tctaattactttgaagtctctacct 12013051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 10371644 - 10371503
Alignment:
Q  59 gagaatcatacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatg 158  Q
    ||||||||||||||||||||||||||||  || |||  || ||||||||||| | ||||||||||||| |||||||||| |||||||||||| |||||||    
T  10371644 gagaatcatacaagcaagagaaggtacttattgttt--taactgagtttttgttgtgtataagttaatatcagttcaatggatccatcatattatatatg 10371547  T
Q  159 cagttaaactttatgttaaaag-caaattgaattcttattatag 201  Q
    |||||||||| | ||||||| | |||||||||||||||| ||||    
T  10371546 cagttaaactctgtgttaaaggtcaaattgaattcttatcatag 10371503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 9284540 - 9284703
Alignment:
Q  71 agcaagagaaggtactcctt-atttattatctgagttttt-gctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaact 168  Q
    |||||||||||||||| ||| ||| ||||||||||||||| ||| ||||||||||||||| |||| ||| || ||||||||| || |||| |||||||||    
T  9284540 agcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtagttaaact 9284639  T
Q  169 ttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtct 231  Q
    |||| ||||| | ||||||||||||||||||| | ||||||| |||| ||||||||||| ||||    
T  9284640 ttatattaaaggtcaaattgaattcttattatcggacaaggagtctccaattactttgatgtct 9284703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 9294990 - 9295144
Alignment:
Q  71 agcaagagaaggtactcctt-atttattatctgagttttt-gctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaact 168  Q
    |||||||||||||||| ||| ||| ||||||||||||||| ||| ||||||||||||||| |||| ||| || ||||||||| || ||||  ||||||||    
T  9294990 agcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtggttaaact 9295089  T
Q  169 ttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattact 222  Q
     |||| |||| | ||||||||||||||||||||| ||| || |||||||||||||    
T  9295090 ctatgctaaaggtcaaattgaattcttattataggacaggggttctctaattact 9295144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 9320736 - 9320599
Alignment:
Q  101 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattat 199  Q
    |||||||||||| ||||| |||| || ||| |||||| || ||||||||||||||||  ||||||||| |||| || | | ||||||||||| |||||||    
T  9320736 tgagtttttgctatgtattagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgctataggtcaaattgaatttttattat 9320637  T
Q  200 agaacaaggattctctaattactttgaagtctctacct 237  Q
     | |||||||| ||||||||||||||||||||||||||    
T  9320636 cggacaaggatactctaattactttgaagtctctacct 9320599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 9364409 - 9364245
Alignment:
Q  70 aagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactt 169  Q
    |||||||||||||||   ||| ||  |||||||||| |||||| |||||||| | || || |||||||  | ||||||||||||||||| | |||||||     
T  9364409 aagcaagagaaggta---cttgttgtttatctgagtctttgctgtgtataagct-atatccgttcaatgaacccatcatatgatatatgtacttaaactc 9364314  T
Q  170 tatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 237  Q
    ||| ||||| | ||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  9364313 tatattaaaggtcaaatggaattcttattataggacaaggagtctctaattactttgaagtctatacct 9364245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 237
Target Start/End: Complemental strand, 10347571 - 10347401
Alignment:
Q  59 gagaatcatacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatg 158  Q
    ||||||||| |||||||||||||||||| ||||||  ||| ||||||||||| | |||||||||| || |||||||||| ||   ||||||| |||||||    
T  10347571 gagaatcatccaagcaagagaaggtacttcttattgtttaactgagtttttgttgtgtataagtt-atatcagttcaatggacttatcatatcatatatg 10347473  T
Q  159 cagttaaactttatgttaaaagcaaattgaattcttattatagaaca-aggattctctaattactttgaagtctctacct 237  Q
    |||||||||| |||        |||||||||||||||| |||| | | || ||| ||||||||||||||||||| |||||    
T  10347472 cagttaaactctat--------caaattgaattcttatcataggatagagtattttctaattactttgaagtctttacct 10347401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 12019285 - 12019388
Alignment:
Q  132 ttcaatagatccatcatatgatatatgcagttaaactttatgttaaaagcaaattgaattcttattatagaacaaggattctctaattactttgaagtct 231  Q
    |||||| || ||||||||||||||||| ||||||||| ||||||||     | | ||||||||||||||| |||||||||||||||||||||||||||||    
T  12019285 ttcaatggacccatcatatgatatatgtagttaaactctatgttaatgt--attggaattcttattataggacaaggattctctaattactttgaagtct 12019382  T
Q  232 ctacct 237  Q
    ||||||    
T  12019383 ctacct 12019388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 9291655 - 9291566
Alignment:
Q  149 atgatatatgcagttaaactttatgttaaaagc-aaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 237  Q
    |||||| ||| ||||||||| |||| |||| |  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9291655 atgatacatgtagttaaactctatgctaaaggttaaattgaattcttattataggacaaggattctctaattactttgaagtctctacct 9291566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 9061545 - 9061675
Alignment:
Q  101 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattat 199  Q
    |||||||||||| |||||||||| || |||||||||| |  ||||||||| ||||||| ||||||||| |||| |||| |  ||||||||||||| ||||    
T  9061545 tgagtttttgctatgtataagttgatgtcagttcaatgg--ccatcatataatatatgtagttaaactctatgctaaaggttaaattgaattcttgttat 9061642  T
Q  200 agaacaag-----gattctctaattactttgaa 227  Q
    || |||||     ||||||||||||||||||||    
T  9061643 aggacaaggatttgattctctaattactttgaa 9061675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 9328355 - 9328228
Alignment:
Q  101 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattat 199  Q
    |||||||||||| |||||||||| || ||| |||||| || || |||||||||||||| ||||||||| |||| |||| | |||||||||||||||  ||    
T  9328355 tgagtttttgctatgtataagttgatgtcaattcaatggacccgtcatatgatatatgaagttaaactctatgctaaaggtcaaattgaattctta--at 9328258  T
Q  200 agaacaaggattctctaattactttgaagtctctacct 237  Q
    ||        ||||||||||||||||||||||||||||    
T  9328257 ag--------ttctctaattactttgaagtctctacct 9328228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 12006543 - 12006595
Alignment:
Q  185 ttgaattcttattatagaacaaggattctctaattactttgaagtctctacct 237  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  12006543 ttgaattcttattttaggacaaggattctctaattactttgaagtctctacct 12006595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 9274276 - 9274200
Alignment:
Q  152 atatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaa 227  Q
    ||||||| |||||||||||||| |||| | ||  ||||||||||||||||| |||||||||| ||||||||||||||    
T  9274276 atatatgtagttaaactttatgctaaaggtcatgttgaattcttattataggacaaggattcactaattactttgaa 9274200  T

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Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 8573934 - 8574024
Alignment:
Q  142 ccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttatta--tagaacaaggattctctaattactttgaagt 229  Q
    |||||||||||||||||  |||||||| |||| |||| | |||||| ||||||||| |  ||| |||||||||||||||||||||||||||    
T  8573934 ccatcatatgatatatgtggttaaactctatgctaaaggtcaaattaaattcttatcacataggacaaggattctctaattactttgaagt 8574024  T

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Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 9272410 - 9272296
Alignment:
Q  103 agtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatag 201  Q
    |||||||||| ||||||||||||| |||||| |||  | |||||||||||| | |||| ||||||   ||| |||| | | |||||||||||||||||||    
T  9272410 agtttttgctatgtataagttaatgtcagtttaatgaacccatcatatgatctttgcaattaaacccaatgctaaaggtctaattgaattcttattatag 9272311  T
Q  202 aacaaggattctcta 216  Q
    ||  |||||||||||    
T  9272310 aaataggattctcta 9272296  T

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Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 9284457 - 9284499
Alignment:
Q  9 aagctatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  9284457 aagctatgatttgtgttgaaagtcttgtgccaccttccttccc 9284499  T

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Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12012808 - 12012858
Alignment:
Q  1 tttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  12012808 tttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccc 12012858  T

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Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 11987747 - 11987796
Alignment:
Q  2 ttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    |||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  11987747 ttcgatgaagctatgatttgtgttggaagtcttgtaccaccctccttccc 11987796  T

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Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 10352794 - 10352738
Alignment:
Q  181 caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 237  Q
    |||||||||||||||| |||| | |||||||||||||||||||||| |||| |||||    
T  10352794 caaattgaattcttatcataggataaggattctctaattactttgacgtctttacct 10352738  T

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Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12019147 - 12019194
Alignment:
Q  1 tttcgatcaagctatgatttgtgttggaagtcttgtgccaccttcctt 48  Q
    ||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  12019147 tttcgatgaagccatgatttgtgttggaagtcttgtaccaccttcctt 12019194  T

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Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 9065937 - 9066135
Alignment:
Q  53 aggaaagagaatcatacaagcaagagaaggtactccttatttattatctgagtttt-------tgctctgtataagttaatttcagttcaatagatcca- 144  Q
    ||||| |||||||  |||| |||||||||||||| |||||||||| ||| ||||||       |||| |||| |||||||| |||||||||| || |||     
T  9065937 aggaaggagaatcgaacaaccaagagaaggtacttcttatttattttctaagttttgagttcttgctttgtacaagttaatatcagttcaatggacccaa 9066036  T
Q  145 -------tcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacc 236  Q
           |||||||||||||| || ||||||||  | | || | ||||||||| |||||| |||| | || |||||||||||||||||||||| ||||||    
T  9066037 tgacccatcatatgatatatgtagctaaacttt--gctcaaggtcaaattgaagtcttatcataggataaagattctctaattactttgaagtttctacc 9066134  T

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Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 9315894 - 9315852
Alignment:
Q  9 aagctatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  9315894 aagctatgatttgtgttgaaagtcttgtaccaccttccttccc 9315852  T

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Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 10347633 - 10347594
Alignment:
Q  12 ctatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  10347633 ctatgttttgtgttggaagtcttgtcccaccttccttccc 10347594  T

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Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 10352981 - 10352942
Alignment:
Q  12 ctatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  10352981 ctatgatttgtgttggaagtcttgtaccaccttacttccc 10352942  T

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Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 9291797 - 9291755
Alignment:
Q  9 aagctatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    |||||||||||||||||| ||||||| | ||||||||||||||    
T  9291797 aagctatgatttgtgttgaaagtcttctaccaccttccttccc 9291755  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 9320853 - 9320815
Alignment:
Q  13 tatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  9320853 tatgttttgtgttggaagtcttgtcccaccttccttccc 9320815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12006377 - 12006427
Alignment:
Q  1 tttcgatcaagctatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    ||||||| |||| ||||||||||||||||||||||| |  |||||||||||    
T  12006377 tttcgatgaagcgatgatttgtgttggaagtcttgtactgccttccttccc 12006427  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 8573794 - 8573835
Alignment:
Q  10 agctatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||    
T  8573794 agctatgttttgtgttggaagtcttgtaccacctttcttccc 8573835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 9291704 - 9291655
Alignment:
Q  81 ggtactccttatttattatctgagtttttgctctgtataagttaatttca 130  Q
    |||||| |||||| |||||||||||||||||| | |||||| ||||||||    
T  9291704 ggtacttcttattgattatctgagtttttgctatttataagctaatttca 9291655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 10335665 - 10335589
Alignment:
Q  60 agaatcatacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaat 137  Q
    |||||| |||||||||| ||||||||| ||||||  ||  ||||||||||| | |||||||||| || ||||||||||    
T  10335665 agaatcgtacaagcaagggaaggtacttcttattgtttgactgagtttttgttgtgtataagtt-atatcagttcaat 10335589  T

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Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 9364503 - 9364467
Alignment:
Q  9 aagctatgatttgtgttggaagtcttgtgccaccttc 45  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  9364503 aagctatgatttgtgttggtagtcttgtaccaccttc 9364467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 10335728 - 10335692
Alignment:
Q  12 ctatgatttgtgttggaagtcttgtgccaccttcctt 48  Q
    |||||||||||||||||||||||||  ||||||||||    
T  10335728 ctatgatttgtgttggaagtcttgtttcaccttcctt 10335692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 10341082 - 10341038
Alignment:
Q  182 aaattgaattcttattatagaacaaggattctctaattactttga 226  Q
    ||||||||||||||| |||| | ||||||||||||||||| ||||    
T  10341082 aaattgaattcttatcataggataaggattctctaattaccttga 10341038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 19393258 - 19393318
Alignment:
Q  182 aaattgaattcttattatagaacaag-----gattctctaattactttgaagtctctacct 237  Q
    |||||||||||||||||||| | |||     ||||||||||||||||||||||||| ||||    
T  19393258 aaattgaattcttattataggaaaaggattagattctctaattactttgaagtctcaacct 19393318  T

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Target: scaffold0667 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 4208 - 4073
Alignment:
Q  103 agtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag-caaattgaattcttattatag 201  Q
    |||||||||| ||||||||||||| || ||||||| || |||||||||||| |||  ||||||||| | || |||||  |||||||||||||||||||||    
T  4208 agtttttgctgtgtataagttaatatctgttcaatggacccatcatatgatttatttagttaaactctgtgctaaaactcaaattgaattcttattatag 4109  T
Q  202 aacaaggattctctaattactttgaagtctctacct 237  Q
     | ||||||||| ||||||||||||| |||||||||    
T  4108 gaaaaggattctataattactttgaattctctacct 4073  T

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Target: scaffold0667; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 4327 - 4289
Alignment:
Q  10 agctatgatttgtgttggaagtcttgtgccaccttcctt 48  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  4327 agctaagatttgtgttggaagtcttgtaccaccttcctt 4289  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 37462236 - 37462098
Alignment:
Q  101 tgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag--caaattgaattcttatta 198  Q
    |||||||||| | ||||||||||  | | |||||| | || ||||||||||||||||| ||||||  | |||| ||||||  |||||||||||||| |||    
T  37462236 tgagtttttgttatgtataagtttctgttagttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattcttgtta 37462137  T
Q  199 tagaacaaggattctctaattactttgaagtctctacct 237  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  37462136 taggacaaggattctctaattactttgaagtctctacct 37462098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 237
Target Start/End: Original strand, 41967066 - 41967236
Alignment:
Q  67 tacaagcaagagaaggtactccttatttattatctgagtttttgctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaa 166  Q
    |||||||||||||||||||| ||| || ||||||| || ||||||| |||||| ||||  || ||| |||| || ||||||||  ||| ||| | |||||    
T  41967066 tacaagcaagagaaggtacttcttgttcattatcttagcttttgctttgtatatgttagatt-agtgcaatggacccatcatacaatacatgtacttaaa 41967164  T
Q  167 ctttatgttaaaag-caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacct 237  Q
    || ||||||||| |  |||||||||||||||||||| | ||  ||||||||||||||| |||| || |||||    
T  41967165 ctctatgttaaaggttaaattgaattcttattataggataactattctctaattacttcgaaggctttacct 41967236  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 41966975 - 41967017
Alignment:
Q  9 aagctatgatttgtgttggaagtcttgtgccaccttccttccc 51  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||    
T  41966975 aagccatgttttgtgttggaagtcttgtaccaccttccttccc 41967017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 26574580 - 26574525
Alignment:
Q  181 caaattgaattcttattatagaacaaggattctctaattactttgaagtctctacc 236  Q
    |||||||||||||||| |||| | |||||||||||||||||||||| |||| ||||    
T  26574580 caaattgaattcttatcataggataaggattctctaattactttgacgtctttacc 26574525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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