View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_high_104 (Length: 251)
Name: NF3223_high_104
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_104 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 21939517 - 21939741
Alignment:
| Q |
16 |
acaagcactcctcagtctaaaatctgagttcatagatgataataatagcttgcatgactgggttgtgccctctggagcatgttcttggtctggcatcaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21939517 |
acaagcactcctcagtctaaaatctgagttcatagatgataataatagcttgcatggctgggttctgccctctggagcatgttcttggtctggcatcaag |
21939616 |
T |
|
| Q |
116 |
tgtgacaatgactcaattgtaacttccatagacctttccatgaagaaactaggtggtgtactatcaggtaaccaattcagtgtgttcacaaaggttattg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21939617 |
tgtgacaatgactcaattgtaacttccatagacctttccatgaagaaactaggtggtgtactatcaggtaaccaattcagtgtgttcacaaaggttattg |
21939716 |
T |
|
| Q |
216 |
atttcaacataagctataatttctt |
240 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
21939717 |
atttcaatataagctataatttctt |
21939741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 92 - 237
Target Start/End: Complemental strand, 10802510 - 10802365
Alignment:
| Q |
92 |
gcatgttcttggtctggcatcaagtgtgacaatgactcaattgtaacttccatagacctttccatgaagaaactaggtggtgtactatcaggtaaccaat |
191 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10802510 |
gcatgttcttggtcaggcatcaagtgtaacaaggactcaaatgtaacttccatagacctttccatgaagaaactaggtggtgtactatcaggtaagcaac |
10802411 |
T |
|
| Q |
192 |
tcagtgtgttcacaaaggttattgatttcaacataagctataattt |
237 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
10802410 |
tcagtgtcttcacagaggttattgatttcaatctaagcaataattt |
10802365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 10802616 - 10802540
Alignment:
| Q |
16 |
acaagcactcctcagtctaaaatctgagttcatagatgataataatagcttgcatgactgggttgtgccctctggag |
92 |
Q |
| |
|
||||||||| || ||||||||||||||| | ||||| || |||||||| ||||||||||||| || |||||||||| |
|
|
| T |
10802616 |
acaagcactactaagtctaaaatctgagcttatagacaatgataatagcctgcatgactgggtggtcccctctggag |
10802540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University