View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_112 (Length: 249)
Name: NF3223_high_112
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_112 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 5034768 - 5035008
Alignment:
| Q |
11 |
cacagaatctaagtgataaggaggaaaaataagtgaactcactatgtcaaaactagtcaccctcttcaccttagctcttctattaagcttgagtttaacc |
110 |
Q |
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| T |
5034768 |
cacagaatctaagtgataaggaggaaaaataagtgaactcactatgtcaaaactagtcaccctcttcaccttagctcttctattaagcttgagtttaacc |
5034867 |
T |
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| Q |
111 |
tctgcctctcgtcctaattttgtatttaaaggtgtctcttcactacacgaggtacgtttttccttcttaattgggtaattagtg--aaagcttatacaag |
208 |
Q |
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| T |
5034868 |
tctgcctctcgtcctaattttgtatttaaaggtgtctcttcactacacgaggtacgtttttccttcttaattgggtaattagtgaaaaatcttatacaag |
5034967 |
T |
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| Q |
209 |
atgttaagttattctttttgttgtgttctatttttgttttt |
249 |
Q |
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| T |
5034968 |
atgttaagttattctttttgttgtgttctatttttgttttt |
5035008 |
T |
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