View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3223_high_113 (Length: 249)
Name: NF3223_high_113
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_113 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 2535635 - 2535881
Alignment:
| Q |
1 |
ggaagaaattaagatggttttccaaaaattatttggaaacgcactagttgatttgaactttgaagttggtgcatatgcttggaatattaacaacgtaaag |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2535635 |
ggaagaaataaagatggttttccaaaaattatttggaaacgcactagttgatttgaactttgaagtttgtgcatatgcttggaatattaacaacgtaaag |
2535734 |
T |
|
| Q |
101 |
aaagcataggattggaatttaggtttgaaagaaacaaccaaggcagcttaaattattattatgcaaattatggtnnnnnnnnnngttgcagcttatgaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
2535735 |
aaagcataggattggaatttaggtttgaaagaaacaaccaaggcagcttaaattattattatgcaaattatgct--aaaaaaaagttgcaggttatgaat |
2535832 |
T |
|
| Q |
201 |
tatgcttaccaaattaaaggcagaggagagatgaagacagctgaagaag |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2535833 |
tatgcttaccaaattaaaggcagaggagagatgaagacagctgaagaag |
2535881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University