View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_114 (Length: 248)

Name: NF3223_high_114
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_114
NF3223_high_114
[»] chr4 (10 HSPs)
chr4 (80-229)||(2924532-2924681)
chr4 (90-235)||(31485399-31485542)
chr4 (79-229)||(31485950-31486100)
chr4 (85-185)||(2924424-2924524)
chr4 (80-186)||(14088308-14088414)
chr4 (79-180)||(3464072-3464173)
chr4 (80-170)||(17869644-17869734)
chr4 (108-180)||(21845033-21845105)
chr4 (108-180)||(21900896-21900968)
chr4 (80-124)||(44095304-44095348)
[»] chr5 (3 HSPs)
chr5 (80-235)||(14209789-14209938)
chr5 (80-229)||(14209019-14209180)
chr5 (108-180)||(40719831-40719903)
[»] chr3 (3 HSPs)
chr3 (80-234)||(49340356-49340512)
chr3 (80-128)||(44636976-44637024)
chr3 (79-161)||(46462637-46462719)
[»] chr8 (2 HSPs)
chr8 (16-81)||(5598094-5598158)
chr8 (16-81)||(5637117-5637181)
[»] chr2 (2 HSPs)
chr2 (80-170)||(40321141-40321231)
chr2 (80-160)||(38823220-38823300)
[»] scaffold0020 (1 HSPs)
scaffold0020 (80-124)||(155425-155469)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 2924681 - 2924532
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaa 179  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||| ||||||    
T  2924681 gagtccatctttgctccattttacttaactccatttactcctttttaatacacagatgactgccatgtggaaaaaataaattcaaaggttgtaattaaaa 2924582  T
Q  180 gaattaacatggtattctttgatacatcagtgcacttccatcttctctcc 229  Q
    ||||||| || ||||||||||||||| |||| ||||||||||||||||||    
T  2924581 gaattaatatagtattctttgatacaccagtacacttccatcttctctcc 2924532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 31485399 - 31485542
Alignment:
Q  90 ttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaagaattaacat 189  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  ||||| |||| ||||||||||||| |     
T  31485399 ttgctcgattttacttaactccatttactcctttttaatacacagatgactgtcatgtggaaaaaataaat--aagggttgtaattaaaagaattaatag 31485496  T
Q  190 ggtattctttgatacatcagtgcacttccatcttctctcctcatct 235  Q
     ||||||||||||||| |||| ||||||||||||||||||||||||    
T  31485497 agtattctttgatacaccagtacacttccatcttctctcctcatct 31485542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 31486100 - 31485950
Alignment:
Q  79 cgagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaa 178  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |  ||| |||||||||||||||||||| | || |||||    
T  31486100 cgagtccatctttgctccattttacttaactccatatactcatttttaatacacagatgacagttatgtggaaaaaataaatccaagggttataattaaa 31486001  T
Q  179 agaattaacatggtattctttgatacatcagtgcacttccatcttctctcc 229  Q
    |||||||| || ||||| ||| ||||| |||| ||||| ||| ||||||||    
T  31486000 agaattaatatagtattttttcatacaccagtacactttcattttctctcc 31485950  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 2924424 - 2924524
Alignment:
Q  85 catctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaagaatt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |  |||| |||||||||||    
T  2924424 catctttgctccattttgcttaactccatttactcctttttaatacacagatgactgtcatgtggaaaaaacaaatccaaagattgtaattaaaagaatt 2924523  T
Q  185 a 185  Q
    |    
T  2924524 a 2924524  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 14088414 - 14088308
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaa 179  Q
    |||||||||||  ||||||||  |||  |||||||||| ||| || |||||| ||||||| | |||| ||||||||||||||||| || |||| ||||||    
T  14088414 gagtccatcttacctccatttaacttggctccatttacccctgttcaatacatagatgacagacatgtggaaaaaataaatccaatggttgtaattaaaa 14088315  T
Q  180 gaattaa 186  Q
    | |||||    
T  14088314 ggattaa 14088308  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 3464072 - 3464173
Alignment:
Q  79 cgagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaa 178  Q
    |||||||| |||  ||||||||  |||  |||||||||| ||| || |||||| ||||||| | |||| ||| ||||||||||||| ||||||| |||||    
T  3464072 cgagtccaacttacctccatttaacttggctccatttacacctgttcaatacatagatgacagacatgtggataaaataaatccaatggctgtaattaaa 3464171  T
Q  179 ag 180  Q
    ||    
T  3464172 ag 3464173  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 17869644 - 17869734
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctg 170  Q
    |||| |||||||||||||||| || |  ||||||||||||||||| ||| || |||||  || ||   || ||||||||||||||||||||    
T  17869644 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggctg 17869734  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 21845033 - 21845105
Alignment:
Q  108 ctccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaag 180  Q
    |||||||||| ||| || |||||| ||||||| | |||| ||| ||||||||||||| || |||| |||||||    
T  21845033 ctccatttacacctgttcaatacatagatgacagacatgtggataaaataaatccaatggttgtaattaaaag 21845105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 21900896 - 21900968
Alignment:
Q  108 ctccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaag 180  Q
    |||||||||| ||| || |||||| ||||||| | |||| ||| ||||||||||||| || |||| |||||||    
T  21900896 ctccatttacacctgttcaatacatagatgacagacatgtggataaaataaatccaatggttgtaattaaaag 21900968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 44095304 - 44095348
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactcctttt 124  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||    
T  44095304 gagttcatctttgctccattttgatttcctccatttactcctttt 44095348  T

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Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 80 - 235
Target Start/End: Complemental strand, 14209938 - 14209789
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaa 179  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      ||||||||||| |||| |||||     
T  14209938 gagttcatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgtgga------aaatccaagggttgtaattaaag 14209845  T
Q  180 gaattaacatggtattctttgatacatcagtgcacttccatcttctctcctcatct 235  Q
    ||||||| || ||||||||||||||| |||| ||||||||||||||||||||||||    
T  14209844 gaattaatatagtattctttgatacaccagtacacttccatcttctctcctcatct 14209789  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 80 - 229
Target Start/End: Original strand, 14209019 - 14209180
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactccttttt------------aatacacagatgactgccatgcggaaaaaataaatccaaggg 167  Q
    |||||||||||||||||||||||||||||| |||||||||||||||            ||||||||||||||||||||| ||||||||||||||||| ||    
T  14209019 gagtccatctttgctccattttgcttaacttcatttactcctttttaatgcacattttaatacacagatgactgccatgtggaaaaaataaatccaaagg 14209118  T
Q  168 ctgtagttaaaagaattaacatggtattctttgatacatcagtgcacttccatcttctctcc 229  Q
     |||| ||||||||||||| || ||||||||||||||| |||| ||||||||||||||||||    
T  14209119 ttgtaattaaaagaattaatatagtattctttgatacaccagtacacttccatcttctctcc 14209180  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 40719831 - 40719903
Alignment:
Q  108 ctccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaag 180  Q
    |||||||||| ||| || |||||| ||||||| | |||| ||| ||||||||||||| || |||| |||||||    
T  40719831 ctccatttacacctgttcaatacatagatgacagacatgtggacaaaataaatccaatggttgtaattaaaag 40719903  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 49340356 - 49340512
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagtt-aaa 178  Q
    ||||| |||||| ||||||||||||| ||||||||||||| | ||||||||| |||||||||||||| ||||||| ||||||||||||||||| || |||    
T  49340356 gagtctatcttttctccattttgcttgactccatttactcttgtttaatacatagatgactgccatgtggaaaaattaaatccaagggctgtaattaaaa 49340455  T
Q  179 agaattaacat-ggtattctttgatacatcagtgcacttccatcttctctcctcatc 234  Q
    | |||||| ||  ||||||||||||||||||   |||||||||||||| || |||||    
T  49340456 aaaattaatataagtattctttgatacatcaacacacttccatcttctttcatcatc 49340512  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 44636976 - 44637024
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactcctttttaat 128  Q
    |||| ||||||||||||||||| ||| |||| |||||||||||||||||    
T  44636976 gagttcatctttgctccattttactttactctatttactcctttttaat 44637024  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 46462719 - 46462637
Alignment:
Q  79 cgagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatc 161  Q
    ||||| |||||||||||||||| ||    ||||||||||||||||| |||||| ||||||||| ||   || |||||||||||    
T  46462719 cgagtgcatctttgctccatttagcaaccctccatttactccttttgaatacatagatgactgacacatggcaaaaataaatc 46462637  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 5598158 - 5598094
Alignment:
Q  16 ttaagtagtttaatggttaaaatttacctcatttaaaattaataagtgggggtgtctaagattcga 81  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||| ||||||||    
T  5598158 ttaagtagtttaatggttaaaatttacatcttttaaaataaataagt-ggggtgtctgagattcga 5598094  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 5637117 - 5637181
Alignment:
Q  16 ttaagtagtttaatggttaaaatttacctcatttaaaattaataagtgggggtgtctaagattcga 81  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||| ||||||||    
T  5637117 ttaagtagtttaatggttaaaatttacatcttttaaaataaataagt-ggggtgtctgagattcga 5637181  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 40321231 - 40321141
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctg 170  Q
    |||| |||||||||||||||| || |  ||||||||||||||||| ||| || |||||  || ||   || ||||||||||||||||||||    
T  40321231 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggctg 40321141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 38823220 - 38823300
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaat 160  Q
    |||| ||||||||||||||||   ||  ||||||||||||||||| |||  |||||||  || |||| |||||||||||||    
T  38823220 gagttcatctttgctccatttatatttgctccatttactccttttgaatttacagatgtgtgacatgtggaaaaaataaat 38823300  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 155425 - 155469
Alignment:
Q  80 gagtccatctttgctccattttgcttaactccatttactcctttt 124  Q
    |||| |||||||||||||||| || | ||||||||||||||||||    
T  155425 gagttcatctttgctccatttagccttactccatttactcctttt 155469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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