View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_117 (Length: 247)

Name: NF3223_high_117
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_117
NF3223_high_117
[»] chr1 (4 HSPs)
chr1 (90-246)||(47012747-47012903)
chr1 (90-246)||(1442823-1442979)
chr1 (92-246)||(33602270-33602424)
chr1 (90-246)||(9121346-9121489)
[»] chr7 (2 HSPs)
chr7 (90-246)||(20478345-20478501)
chr7 (90-245)||(56674-56829)
[»] chr5 (4 HSPs)
chr5 (94-246)||(29621450-29621602)
chr5 (90-246)||(40780853-40781009)
chr5 (98-246)||(42473280-42473428)
chr5 (90-246)||(32135472-32135628)
[»] chr6 (3 HSPs)
chr6 (90-246)||(32455556-32455712)
chr6 (91-246)||(13613207-13613362)
chr6 (187-246)||(3457051-3457110)
[»] chr2 (3 HSPs)
chr2 (90-246)||(37020811-37020967)
chr2 (90-246)||(24207736-24207892)
chr2 (90-246)||(6785666-6785822)
[»] chr8 (4 HSPs)
chr8 (90-246)||(15306100-15306256)
chr8 (90-246)||(15486469-15486625)
chr8 (90-246)||(27406582-27406738)
chr8 (163-244)||(11721465-11721546)
[»] chr3 (1 HSPs)
chr3 (90-246)||(19987261-19987420)
[»] chr4 (2 HSPs)
chr4 (93-246)||(35404077-35404230)
chr4 (177-246)||(25993843-25993912)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 47012747 - 47012903
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47012747 gaacaagagtgaatggaaaacaaagttaaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 47012846  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47012847 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 47012903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 1442979 - 1442823
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  1442979 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttgcaaggatgatcgccggtga 1442880  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1442879 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 1442823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 92 - 246
Target Start/End: Original strand, 33602270 - 33602424
Alignment:
Q  92 acaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatgatg 191  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||    
T  33602270 acaagagtgaatggaaaacaaagttgaatggcgttaccttgacaaaccacgaaatctgacttcaaaactgaatcttttccaaggatgatcgtcggtgatg 33602369  T
Q  192 atgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  33602370 atgatgattttggtgaagtgaatagggtgacggtttaggcgggaaggtgaaaggt 33602424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 9121346 - 9121489
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||             |||||||||||||||||||||||||||| |||    
T  9121346 gaacaagagtgaatggaaaacaaagtttaatggctataccttgacaaaccacaaa-------------accgaatcttttccaaggatgatcgccggtga 9121432  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9121433 tgatgatgattttggtgaagtgaagagggttacagtttaggcgggaaggtgaaaggt 9121489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 20478501 - 20478345
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20478501 gaacaagagtgaatggaaaacaaagtttaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccggtga 20478402  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20478401 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 20478345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 56829 - 56674
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  56829 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacgaaatctgacttcaaaaccgaatcttttccaaggatgatcgccggtga 56730  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaagg 245  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  56729 tgatgatgattttggtgaagtgaagagggtgacaatttaggcgggaaggtgaaagg 56674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 94 - 246
Target Start/End: Original strand, 29621450 - 29621602
Alignment:
Q  94 aagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatgatgat 193  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29621450 aagagtgaatggaaaacaaagtttaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatgatgat 29621549  T
Q  194 gatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29621550 gatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 29621602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 40781009 - 40780853
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40781009 gaacaagagtgaaaggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccggtga 40780910  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40780909 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 40780853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 98 - 246
Target Start/End: Original strand, 42473280 - 42473428
Alignment:
Q  98 gtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatgatgatgatg 197  Q
    ||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42473280 gtgaatggaaaacgaagttgaatggcgttaccttgacaaaccacgaaatctgacttcaaaaccgaatcttttccaaggatgatcgccggtgatgatgatg 42473379  T
Q  198 attttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42473380 attttggtgaagtgaagagggtgacggtttaggcgggaaggtgaaaggt 42473428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 32135472 - 32135628
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||||||| |||| ||||||||||||||| |||||||| |||| |||| |||| |||    
T  32135472 gaacaagagtgaatggaaaacgaagttgaatggcgttaccttgacaaaccaaaaaaactgacttcaaaaccgtatcttttctaaggttgattgccggtga 32135571  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||    
T  32135572 tgatgatgattttggagaagcggagagggtgacggtttaggcgggaaggtgaaaggt 32135628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 32455556 - 32455712
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  32455556 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaatcgaatcttttccaaggatgatcgccggtga 32455655  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32455656 tgatgatgattttggtgaagtgaagagggtaacagtttaggcgggaaggtgaaaggt 32455712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 91 - 246
Target Start/End: Original strand, 13613207 - 13613362
Alignment:
Q  91 aacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatgat 190  Q
    ||||| ||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  13613207 aacaaaagtgaatggaaaacaaagttgaatggtgttaccttgacaaaccacgaaatctgacttcaaaaccgaatattttccaaggttgatcgccggtgat 13613306  T
Q  191 gatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    ||| || ||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  13613307 gataataattttggagaagtgtagagggtgacggtttaggcgggaaggtgaaaggt 13613362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 3457110 - 3457051
Alignment:
Q  187 tgatgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3457110 tgatgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 3457051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 37020967 - 37020811
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  37020967 gaacaagagtgaatggaaaacaaagtttaatggctataccttgacaaaccacaaaatctaacttcaaaaccgaatcttttccaaggatgatcgccggtga 37020868  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37020867 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 37020811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 24207736 - 24207892
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  24207736 gaacaagagtgaatggaaaacaaagttgaatgtctataccttgacaaaccacgaaatctgacttcaaaaccgaatcttttccaaggatgatcgccggtga 24207835  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24207836 tgatgatgattttggtgaagtgaagagggtgacggtttaggcgggaaggtgaaaggt 24207892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 6785666 - 6785822
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  6785666 gaacaagagtgaatggaaaacaaagttgaatgtctataccttgacaaaccacgaaatctgacttgaaaactgaatcttttccaaggatgatcgccgatga 6785765  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6785766 tgatgatgattttggtgaagtgaagagggtgacggtttaggcgggaaggtgaaaggt 6785822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 15306256 - 15306100
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  15306256 gaacaagagtgaatggaaaacaaagttgaatgtctataccttgacaaaccacgaaatctgacttcaaaaccgaatcttttccaaggatgatcgccggtga 15306157  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  15306156 tgatgatgattttggtgaagtgaagagggtgacggttttggcgggaaggtgaaaggt 15306100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 15486625 - 15486469
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  15486625 gaacaagagtgaatggaaaacaaagttgaatgtctataccttgacaaaccacgaaatctgacttcaaaaccgaatcttttccaaggatgatcgccggtga 15486526  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  15486525 tgatgatgattttggtgaagtgaagagggtgacggttttggcgggaaggtgaaaggt 15486469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 27406582 - 27406738
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatga 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  27406582 gaacaagagtgaatggaaaacaaagttgaatgtctataccttgacaaaccacgaaatctgacttcaaaaccgaatcttttccaaggatgatcgccggtga 27406681  T
Q  190 tgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  27406682 tgatgatgattttggtgaagtgaaaagggtgacggtttaggcgggaaggtgaaaggt 27406738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 11721465 - 11721546
Alignment:
Q  163 atcttttccaaggatgatcgccgatgatgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaag 244  Q
    ||||||||||| | |||||||||  ||||||||||||||||| || ||||||| |||||  ||||  ||||||||| |||||    
T  11721465 atcttttccaatgttgatcgccggagatgatgatgattttggagaggtgaagaaggtgaaggttttagcgggaaggagaaag 11721546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 19987261 - 19987420
Alignment:
Q  90 gaacaagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgcc---ga 186  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||   ||    
T  19987261 gaacaagagtgaatggaaaacaaagttgaatggtgttaccttgacaaaccacgaaatctgacttcaaaatcaaatcttttccaagaatgatcgccggtga 19987360  T
Q  187 tgatgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19987361 tgatgatgatgattttggtgaagtgaagagggtgacggtttaggcgggaaggtgaaaggt 19987420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 93 - 246
Target Start/End: Original strand, 35404077 - 35404230
Alignment:
Q  93 caagagtgaatggaaaacaaagttgaatggctataccttgacaaaccacaaaatctgacttcaaaaccgaatcttttccaaggatgatcgccgatgatga 192  Q
    |||||||||||||||||| |||||||||| |  ||||||||||||||||  |||||||||||||||||| ||||||||||||| |||||||||  |||||    
T  35404077 caagagtgaatggaaaacgaagttgaatgtcgttaccttgacaaaccacgtaatctgacttcaaaaccgtatcttttccaaggttgatcgccggcgatga 35404176  T
Q  193 tgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||| ||||||    
T  35404177 tgatgattttggagaagtgaagagggtgacaatttaggcgggaaggtaaaaggt 35404230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 25993912 - 25993843
Alignment:
Q  177 tgatcgccgatgatgatgatgattttggtgaagtgaagagggtgacagtttaggcgggaaggtgaaaggt 246  Q
    |||||||||| ||||||||||||||||| || ||||||| |||||  |||| |||||||||| |||||||    
T  25993912 tgatcgccgaagatgatgatgattttggagaggtgaagatggtgaaggttttggcgggaaggagaaaggt 25993843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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