View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_119 (Length: 246)
Name: NF3223_high_119
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_119 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 43476497 - 43476726
Alignment:
| Q |
1 |
atcaatctaactgtgagatccattggtcattttgaaattattctacttattttgaatatcttgaaggacatggagtggagtcttttgggaaaagccatga |
100 |
Q |
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| T |
43476497 |
atcaatctaactgtgagatccattggtcattttgaaattattctacttattttgaatatcttgaaggacatggagtggagtcttttgggaaaagccatga |
43476596 |
T |
|
| Q |
101 |
cttgcttaaattcttttggacttgttactggtacatttctacttggctttgatggttcaagtaaaattcctaaaaacatttatagatatgtagattggag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
43476597 |
cttgcttaaattcttttggacttgttactggtacatttctacttggctttgatggttcaagtaaaattcctaaaagcatttgtagatatgcagattggag |
43476696 |
T |
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| Q |
201 |
tatgcatgttatttttacatgggactataa |
230 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
43476697 |
tatgcaggttatttttacatgggactataa |
43476726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 43563799 - 43563577
Alignment:
| Q |
5 |
atctaactgtgagatccattggtcattttgaaattattctacttattttgaatatcttgaaggacatggagtggagtcttttgggaaaagccatgacttg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
43563799 |
atctaactgtgagatccattggtcattttgaaattattctacttattttgaatatcttgaaggacatggagtggagtc--ttgggaaaagccatcacttg |
43563702 |
T |
|
| Q |
105 |
cttaaattcttttggacttgttactggtacatttctacttggctttgatggttcaagtaaaattcctaaaaacatttatagatatgtagattggagtatg |
204 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |||| |||||||| ||||||||||||| |
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| T |
43563701 |
cttaaattcttttggacttgttgctggtacatttctacttggctttgatggttcaagtaaaatttct-aaaatatttgtagatatgcagattggagtatg |
43563603 |
T |
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| Q |
205 |
catgttatttttacatgggactataa |
230 |
Q |
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|| ||||||||||||||||||||||| |
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| T |
43563602 |
caggttatttttacatgggactataa |
43563577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 39367460 - 39367359
Alignment:
| Q |
77 |
ggagtcttttgggaaaagccatgacttgcttaaattcttttggacttgttactggtacatttctacttggctttgatggttcaagtaaaattcctaaaaa |
176 |
Q |
| |
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|||||||| ||||| ||||||||||||| |||| | ||||||||||||||||| ||||||| |||||||| ||||| |||| |||||||||||| |
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| T |
39367460 |
ggagtcttatgggatttgccatgacttgctcaaatacatttggacttgttactggcgcatttcttcttggctt---tggtttaagtgaaattcctaaaag |
39367364 |
T |
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| Q |
177 |
cattt |
181 |
Q |
| |
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||||| |
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| T |
39367363 |
cattt |
39367359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 37280917 - 37280881
Alignment:
| Q |
115 |
tttggacttgttactggtacatttctacttggctttg |
151 |
Q |
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|||||||||||||||||| ||||||||||||| |||| |
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| T |
37280917 |
tttggacttgttactggtgcatttctacttggatttg |
37280881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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