View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_12 (Length: 514)
Name: NF3223_high_12
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 11 - 495
Target Start/End: Complemental strand, 34350677 - 34350193
Alignment:
| Q |
11 |
cagagaacagtttcaggtcaatattggaagagaatttgagttcaacaaggaacaattttgagcaagaaaatgtgatggggatgtgtcaacaagtgaatag |
110 |
Q |
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| T |
34350677 |
cagagaacagtttcaggtcaatattggaagaaaatttgagttcaacaaggaacaattttgagcaagaaaatgtgatggggatgtgtcaacaagtgaatag |
34350578 |
T |
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| Q |
111 |
aaataatttctctctggatcaaaatcagtttagtcctcaatatagttctggagatagtaatgttattacaagccaatgtttaccaacaaattttcaaatg |
210 |
Q |
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| T |
34350577 |
aaataatttctctctggatcaaaatcagtttagtcctcaatatagttctggagatagtaatgttattacaagccaatgtttaccaacaaattttcaaatg |
34350478 |
T |
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| Q |
211 |
gattcttcaactttatatggtactccatcaattttacaaggttcatttgagaacagatccatgactagtacttttccatatccaacaaataactatggat |
310 |
Q |
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| T |
34350477 |
gattcttcaactttatatggaactccatcaattttacaaggttcatttgagaacagatccatgagtagtacttttccatatccaacaaataactatggat |
34350378 |
T |
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| Q |
311 |
taaactctaataatgagttgaatattatgccagcttctaataattggtctaataataaagttcctcaattttttatgagaacttcacctccaaaacaacc |
410 |
Q |
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| T |
34350377 |
taaactctaataatgagttgaatattatgccagcttctaataattggtctaataataaagttcctcaattttttatgagaacttcacctccaaaacaacc |
34350278 |
T |
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| Q |
411 |
aactaataaccagttgcattttactaacaacacccctttttggaatgcttctgaggctcctaattctatcaaggatgttaggtct |
495 |
Q |
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| T |
34350277 |
aaccaataaccagttgcattttactaacaacacccctttttggaatgcttctgaggctcctaattccgtcaaggatgttaggtct |
34350193 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 23874877 - 23874843
Alignment:
| Q |
136 |
cagtttagtcctcaatatagttctggagatagtaa |
170 |
Q |
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| T |
23874877 |
cagtttagtcctcaatatagttctggagatagtaa |
23874843 |
T |
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