View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_120 (Length: 245)

Name: NF3223_high_120
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_120
NF3223_high_120
[»] chr1 (4 HSPs)
chr1 (1-230)||(29452951-29453180)
chr1 (12-222)||(29423542-29423752)
chr1 (1-225)||(29442970-29443197)
chr1 (13-226)||(29467432-29467644)
[»] chr2 (18 HSPs)
chr2 (1-226)||(10336104-10336332)
chr2 (7-226)||(9292200-9292416)
chr2 (12-214)||(9321250-9321452)
chr2 (14-225)||(9283833-9284044)
chr2 (16-180)||(12012234-12012398)
chr2 (11-227)||(9274788-9275001)
chr2 (20-226)||(9060777-9060983)
chr2 (168-226)||(9357613-9357671)
chr2 (10-226)||(9316300-9316516)
chr2 (6-135)||(8579220-8579349)
chr2 (1-50)||(9328859-9328908)
chr2 (85-194)||(11987155-11987264)
chr2 (168-225)||(8573142-8573199)
chr2 (18-50)||(12005936-12005968)
chr2 (19-138)||(7612243-7612362)
chr2 (12-50)||(9065410-9065448)
chr2 (12-50)||(10348065-10348103)
chr2 (168-225)||(7115282-7115339)
[»] chr8 (1 HSPs)
chr8 (12-226)||(41966365-41966579)
[»] chr3 (1 HSPs)
chr3 (95-226)||(37462855-37462986)
[»] chr4 (1 HSPs)
chr4 (29-226)||(26575164-26575361)
[»] scaffold0667 (1 HSPs)
scaffold0667 (14-226)||(4759-4971)
[»] chr7 (1 HSPs)
chr7 (58-130)||(45238296-45238368)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 29453180 - 29452951
Alignment:
Q  1 caagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29453180 caagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttcca 29453081  T
Q  101 cgagttcattttcgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgttt 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29453080 cgagttcattttcgagctgaagagtctcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgttt 29452981  T
Q  201 aacggatcaaaaccaaagccgtgaacacat 230  Q
    ||||||||||||||||||||||||||||||    
T  29452980 aacggatcaaaaccaaagccgtgaacacat 29452951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 29423542 - 29423752
Alignment:
Q  12 gtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattt 111  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||| |||| |||||| ||| |||||  ||||||| ||||||||||||||  |||    
T  29423542 gtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttt 29423641  T
Q  112 tcgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaa 211  Q
    |||||||||||||| || ||||||| ||||||||||| | ||||   || |||| |||  ||||| ||||||||||||||||  |  |||| ||||||||    
T  29423642 tcgagctgaagagtctcgcatgtgattcagaagtagattgttgtatctcgacgaaacagaagattgtgaggagtttgtaatcatcagttaatggatcaaa 29423741  T
Q  212 accaaagccgt 222  Q
    ||| |||||||    
T  29423742 accgaagccgt 29423752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 29443197 - 29442970
Alignment:
Q  1 caagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccctctgttc---gaggataggaaagagcgtacggcatactaggaaggtcttt 97  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| |||||  |||||   ||| ||||||||||| ||| |||||| ||||||| |||||    
T  29443197 caagtttccgagtcattacccagtgaagggaattctcaacaaaatcccccattgttcttcgagcataggaaagagtgtaaggcatagtaggaagttcttt 29443098  T
Q  98 ccacgagttcattttcgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacg 197  Q
    |||||||||  ||||  ||||||||||| | |||||||| ||| ||||||||| ||||    ||||||  ||||||||||||| |||||||||||||  |    
T  29443097 ccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgagtttgtaatcgttg 29442998  T
Q  198 tttaacggatcaaaaccaaagccgtgaa 225  Q
     | || ||||||||||| ||||||||||    
T  29442997 gtcaatggatcaaaaccgaagccgtgaa 29442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 29467644 - 29467432
Alignment:
Q  13 tcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcatttt 112  Q
    |||||||||| |||||||||||||||||||||||| ||   ||| |||||||| |||||| |||||||||||||| |||  ||||||| |||||| ||||    
T  29467644 tcattatccaatgaagagaattctcaacaaaaaccaccatggtttgaggatagtaaagagagtacggcatactagaaagtactttccaggagttcgtttt 29467545  T
Q  113 cgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaaa 212  Q
    ||||||||||||| | ||||||||||||  |||   ||  ||| | |  |||| |||||||||||||| ||||||||||||  || |||| |||||||||    
T  29467544 cgagctgaagagtgtaacatgtgaatcatgagtgtggtggtgtagtttgacgaaacaagagattctga-gagtttgtaatcatcggttaatggatcaaaa 29467446  T
Q  213 ccaaagccgtgaac 226  Q
    || |||||||||||    
T  29467445 ccgaagccgtgaac 29467432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 10336104 - 10336332
Alignment:
Q  1 caagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttcca 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||   ||| ||| |||| |||||   |||||||||   |||||   ||||||    
T  10336104 caagtttcggagtcattatccagtgaagagaattctcaacaaaaacacccatggttagagtatagtaaagaatatacggcatatccggaagtgttttcca 10336203  T
Q  101 cgagttcattttcgagctgaagagtttcacatgtga---atcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacg 197  Q
     |||||  ||||||||||||||||| ||| ||||||   |||| |||||  || |||| |||| ||||  ||||||||||||||||||||||||||| ||    
T  10336204 agagtttgttttcgagctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaagagattctgaggagtttgtaatcggcg 10336303  T
Q  198 tttaacggatcaaaaccaaagccgtgaac 226  Q
      ||| | ||||||||| || ||||||||    
T  10336304 gataatgaatcaaaaccgaatccgtgaac 10336332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 9292200 - 9292416
Alignment:
Q  7 tccgagtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagtt 106  Q
    |||||||||||| |||||| | |||||||| |||||||||||||   | | ||  |||   ||||||||||||||||||||||| |  ||||||||||||    
T  9292200 tccgagtcattacccagtggatagaattctgaacaaaaacccccatagcttgaacatattgaagagcgtacggcatactaggaatgattttccacgagtt 9292299  T
Q  107 cattttcgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacgga 206  Q
      |||| |||||||||||| |||| |||| |||| |||   |||| ||| | ||  | || ||||||||||||||||||||||||||| || |||| |||    
T  9292300 agttttggagctgaagagtctcacctgtggatcaaaag---agtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatgga 9292396  T
Q  207 tcaaaaccaaagccgtgaac 226  Q
    ||| |||| |||||||||||    
T  9292397 tcataaccgaagccgtgaac 9292416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 9321250 - 9321452
Alignment:
Q  12 gtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattt 111  Q
    |||||||||||||||||||||||||||||||||||||||     | ||| ||||  ||||| |||||||||||| ||||    ||||||||||||  ||     
T  9321250 gtcattatccagtgaagagaattctcaacaaaaacccccatgaattgagcatagataagagagtacggcatactgggaattattttccacgagtttgtta 9321349  T
Q  112 tcgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaa 211  Q
    | |||||||||||| | |||||||||||| ||  |||||  ||||||    | |  ||||||||||||||||||||||||||| || |||| ||||||||    
T  9321350 tagagctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaa 9321449  T
Q  212 acc 214  Q
    |||    
T  9321450 acc 9321452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 9284044 - 9283833
Alignment:
Q  14 cattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattttc 113  Q
    |||||||||||||| ||||||||||||||||||||||   | | ||| |||| ||| || ||| |||||| ||||||    ||||||||||||  ||||     
T  9284044 cattatccagtgaatagaattctcaacaaaaacccccatggcttgagcatagtaaacagtgtagggcataataggaattattttccacgagtttgttttg 9283945  T
Q  114 gagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaaac 213  Q
    |||||||||||| |  ||||||||| | ||  ||||| |||| ||   || |  |||||||||| |||||||||||||||| || |||| ||||||||||    
T  9283944 gagctgaagagtctggcatgtgaatgataaaaagagttttgtagagatactagccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaac 9283845  T
Q  214 caaagccgtgaa 225  Q
    | ||||||||||    
T  9283844 cgaagccgtgaa 9283833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 12012398 - 12012234
Alignment:
Q  16 ttatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattttcga 115  Q
    ||||||| ||||||||||||||||||||||| |||   ||| ||| |||| ||||| | ||    |||||||||||  |||||||||||||  |||||||    
T  12012398 ttatccaatgaagagaattctcaacaaaaactcccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcga 12012299  T
Q  116 gctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctga 180  Q
    | |||||||| | |||| ||||||| ||||||||| ||||  ||||||||  |||||||||||||    
T  12012298 ggtgaagagtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctga 12012234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 9274788 - 9275001
Alignment:
Q  11 agtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcatt 110  Q
    |||||||| |||||||||||||||||||||||||| ||||   | | ||  |||   |||||||||||||||||| ||||    ||||||||||||  ||    
T  9274788 agtcattacccagtgaagagaattctcaacaaaaatccccatggcttgaacatatttaagagcgtacggcatactgggaattattttccacgagtttgtt 9274887  T
Q  111 ttcgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaa 210  Q
    ||| ||||||||||| |||||||||| ||| |   |||||| |||  |||| | |  || ||||||||||| ||||| |||||| ||  ||| |||||||    
T  9274888 ttcaagctgaagagtctcacatgtgattcaaa---agagtaatgtatatcagctaaccatgagattctgagaagtttataatcgccggataaaggatcaa 9274984  T
Q  211 aaccaaagccgtgaaca 227  Q
    ||||||| |||||||||    
T  9274985 aaccaaaaccgtgaaca 9275001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 9060983 - 9060777
Alignment:
Q  20 ccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattttcgagctg 119  Q
    ||||||||||||||||| |||||||||||||   | | ||  |||   |||||||||||||||||| ||||    ||||||||||||  ||||| ||||     
T  9060983 ccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagcta 9060884  T
Q  120 aagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagc 219  Q
    |||||  | |||||||||||| ||  |  || |||| || |||  |  |||| |||||||||||||||||||||| || | || ||||||||||| ||||    
T  9060883 aagagactgacatgtgaatcataaaaaatgttttgtcgagcaaataaccaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagc 9060784  T
Q  220 cgtgaac 226  Q
    |||||||    
T  9060783 cgtgaac 9060777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 9357613 - 9357671
Alignment:
Q  168 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 226  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||    
T  9357613 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaac 9357671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 9316300 - 9316516
Alignment:
Q  10 gagtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcat 109  Q
    ||||||||| ||||||||||||||||| |||||||||||||   | | ||  |||   |||||||||||||||||| ||||    ||||||||||||  |    
T  9316300 gagtcattacccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgt 9316399  T
Q  110 tttcgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatca 209  Q
    |||| |||| |||||  | |||||||||||| ||  |||| | ||   |||  | || ||||| ||||||||||||||||||||  |  || | ||||||    
T  9316400 tttcaagctaaagagactgacatgtgaatcataaaaagagcaatgaccatcggccatccaagaaattctgaggagtttgtaatcacctgttgatggatca 9316499  T
Q  210 aaaccaaagccgtgaac 226  Q
    ||||| |||||||||||    
T  9316500 aaaccgaagccgtgaac 9316516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 8579349 - 8579220
Alignment:
Q  6 ttccgagtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagt 105  Q
    ||||||||||  | |||||| |||||||||||||| ||||||||| | | | |||    | ||||||||||||| ||| |||||||  ||||||||||||    
T  8579349 ttccgagtcacaacccagtggagagaattctcaacgaaaacccccacaggttgagtgctgtaaagagcgtacgggatattaggaagtgctttccacgagt 8579250  T
Q  106 tcattttcgagctgaagagtttcacatgtg 135  Q
    |  |||| |||||||||||| |||| ||||    
T  8579249 ttgttttggagctgaagagtctcacctgtg 8579220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9328859 - 9328908
Alignment:
Q  1 caagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccc 50  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  9328859 caagtttcttagtcattatccagtgaagagaattctcaaccaaaaccccc 9328908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 11987264 - 11987155
Alignment:
Q  85 taggaaggtctttccacgagttcattttcgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggag 184  Q
    |||||||  |||||||||||||| | |||||| |||||||| | |||| ||||||| |||||  ||  ||| ||||||| |  ||||||||||||| |||    
T  11987264 taggaagtactttccacgagttcgtcttcgaggtgaagagtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgatgag 11987165  T
Q  185 tttgtaatcg 194  Q
    ||||||||||    
T  11987164 tttgtaatcg 11987155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 8573199 - 8573142
Alignment:
Q  168 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaa 225  Q
    |||||||||| |||||||||||||||| || ||||  |||||||||| ||||||||||    
T  8573199 caagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 12005968 - 12005936
Alignment:
Q  18 atccagtgaagagaattctcaacaaaaaccccc 50  Q
    |||||||||||||||||||||||||||||||||    
T  12005968 atccagtgaagagaattctcaacaaaaaccccc 12005936  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 7612243 - 7612362
Alignment:
Q  19 tccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattttcgagct 118  Q
    |||| |||||||||||||||||||| |||||||  ||| || || |  ||| ||||||  ||||| | |||||  ||||||| |||||||||||| || |    
T  7612243 tccaatgaagagaattctcaacaaagacccccttggtttgatgagataaaacagcgtaaagcatattgggaagtactttccatgagttcattttcaagtt 7612342  T
Q  119 gaagagtttcacatgtgaat 138  Q
    | ||||| |||| |||||||    
T  7612343 gtagagtctcacttgtgaat 7612362  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 9065448 - 9065410
Alignment:
Q  12 gtcattatccagtgaagagaattctcaacaaaaaccccc 50  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  9065448 gtcattatcaagtgaatagaattctcaacaaaaaccccc 9065410  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 10348065 - 10348103
Alignment:
Q  12 gtcattatccagtgaagagaattctcaacaaaaaccccc 50  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  10348065 gtcataatccagtgaatagaattctcaacaaaaaccccc 10348103  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 7115339 - 7115282
Alignment:
Q  168 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaa 225  Q
    |||||||||||||| |||||||||||  |  |||| ||||||||||| ||||||||||    
T  7115339 caagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaa 7115282  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 41966579 - 41966365
Alignment:
Q  12 gtcattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattt 111  Q
    ||||||||||||||||||||||| | |||||||||||||   ||| ||| |||| ||||||| |||||||| || ||||    ||||||||||||  |||    
T  41966579 gtcattatccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttt 41966480  T
Q  112 tcgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaa 211  Q
    | ||||| || ||  | |||||||||||| ||||||||  |||| ||||||     |||||||||||||||||||||| ||||  | |||| ||||||||    
T  41966479 tagagctaaatagcctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgaggagtttgtgatcgctggttaatggatcaaa 41966380  T
Q  212 accaaagccgtgaac 226  Q
    ||| || ||||||||    
T  41966379 accgaatccgtgaac 41966365  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 37462855 - 37462986
Alignment:
Q  95 tttccacgagttcattttcgagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcg 194  Q
    ||||||||||||  |||| |||||||||||| ||||||||| |||| ||  || || |||| |||| |  |  |||||||||||||||||||||||||||    
T  37462855 tttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctgaggagtttgtaatcg 37462954  T
Q  195 acgtttaacggatcaaaaccaaagccgtgaac 226  Q
     || |||| | ||||||||| |||||||||||    
T  37462955 ccggttaaagaatcaaaaccgaagccgtgaac 37462986  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 26575164 - 26575361
Alignment:
Q  29 agaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattttcgagctgaagagtttc 128  Q
    |||||||||||||||||| |||  |||||||| |||| |||||||||| || | | ||||||    |||||| |||||  ||||| ||||||||||| |     
T  26575164 agaattctcaacaaaaacacccattgttcgagtatagtaaagagcgtaaggaaaattaggaattattttccatgagtttgttttcaagctgaagagtcta 26575263  T
Q  129 acatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 226  Q
    ||||||| |||| ||  || || |||| |||| |  |   |||||||||||||||||||||||||| ||  ||| | ||||||||| |||||||||||    
T  26575264 acatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaac 26575361  T

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Target: scaffold0667 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 4759 - 4971
Alignment:
Q  14 cattatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattttc 113  Q
    |||||||||||||| ||||| |||||| |||||||||   ||| ||| | ||  ||| |||||||||||| ||||||    ||||||||||||  |||||    
T  4759 cattatccagtgaatagaatcctcaaccaaaacccccatggtttgagcaaagacaagggcgtacggcatagtaggaattattttccacgagttggttttc 4858  T
Q  114 gagctgaagagtttcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcgacgtttaacggatcaaaac 213  Q
     |||| |||||| | ||||||| |||| ||  || || |||| ||   || |  ||||||| |||||||| |||||||||| || |||| ||||||||||    
T  4859 aagctaaagagtctaacatgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaac 4958  T
Q  214 caaagccgtgaac 226  Q
    | |||||||||||    
T  4959 cgaagccgtgaac 4971  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 45238296 - 45238368
Alignment:
Q  58 gaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattttcgagctgaagagtttcac 130  Q
    |||||||| | ||||| || || |||||||||||  |||||||||| |||||||| ||| |||||||| ||||    
T  45238296 gaggatagtatagagcataaggtatactaggaagtactttccacgaattcatttttgaggtgaagagtatcac 45238368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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