View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_122 (Length: 244)
Name: NF3223_high_122
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_122 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 20134042 - 20133861
Alignment:
| Q |
19 |
tacctctgatcgcaatgttgtattcttcactgtttttcgtttgctccagaaccctccaatcattaccaatcttccagaagatcctaaccatcaacttacg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20134042 |
tacctctgatcgcaatgttgtattcttcactgtttttcgtttgctccagaaccctccaatcat-accaatcttccagaagatcctaaccatcaacttacg |
20133944 |
T |
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| Q |
119 |
aacaaggactgccattatgttgttggttcatgcaatagattactctgcttgttctgtcagtttttcaactccaattttaatag |
201 |
Q |
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| T |
20133943 |
aacaaggactgtcattatgttgttggttcatgcaatggattactctgcttgttctgtcaatttttcaactccaattttaatag |
20133861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 20141543 - 20141362
Alignment:
| Q |
20 |
acctctgatcgcaatgttgtattcttcactgtttttcgtttgctccagaaccctccaatcattaccaatcttccagaagatcctaaccatcaacttacga |
119 |
Q |
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|||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| | |
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| T |
20141543 |
acctctcatctcaatgttatattcttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagatcctaaccatcaacttgcag |
20141444 |
T |
|
| Q |
120 |
acaaggactgccattatgttgttggttcatgcaatagattactctgcttgttctgtcagtttttcaactccaattttaatag |
201 |
Q |
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| T |
20141443 |
acaagggctgtctctttgttgttggttcctgcaatggattactttgtttgttcagtcagtttttcacctctgattttaatag |
20141362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 20126864 - 20126682
Alignment:
| Q |
19 |
tacctctgatcgcaatgttgtattcttcactgtttttcgtttgctccagaaccctccaatcattaccaatcttccagaagatcctaaccatcaacttacg |
118 |
Q |
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| T |
20126864 |
tacctctggtcgcaatgttctatgcttcactgtttttcatctactccagaaccctccattcattttcaatcttccaaaggatccatactatcaacttgca |
20126765 |
T |
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| Q |
119 |
aacaaggactgccattatgttgttggttcatgcaatagattactctgcttgttctgtcagtttttcaactccaattttaatag |
201 |
Q |
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||||||||||||| | |||||||||||| |||||| |||||||||||||||| || || |||||| ||||||||||||||| |
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| T |
20126764 |
aacaaggactgcctgtttgttgttggttcctgcaatggattactctgcttgtttggttaggttttcacctccaattttaatag |
20126682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 20338271 - 20338434
Alignment:
| Q |
19 |
tacctctgatcgcaatgttgtattcttcactgtttttcgtttgctccagaaccctccaatcattaccaatcttccagaagatcctaaccatcaacttacg |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||| |||| ||||||| |
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| T |
20338271 |
tacctctgatcgcaatgttgtatccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccacaaacttac- |
20338369 |
T |
|
| Q |
119 |
aacaaggactgccattatgttgttggttcatgcaatagattactctgcttgttctgtcagtttttca |
185 |
Q |
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||||| ||| ||||| |||||||| | |||| ||||||||||||||| |||||||||||| |
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| T |
20338370 |
--agaggacagcctctatgtcgttggttcctacaatggattactctgcttgtatggtcagtttttca |
20338434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 22063001 - 22063126
Alignment:
| Q |
43 |
cttcactgtttttcgtttgctccagaaccctccaatcattaccaatcttccagaagatcctaaccatcaacttacgaacaaggactgccattatgttgtt |
142 |
Q |
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|||||| ||||| ||||||||| |||||||||||||||||| |||||||||| || ||||| |||||||||| | ||||||| ||||| || | ||| |
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| T |
22063001 |
cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaaaaaatccttaccatcaactgaatgacaaggattgccactacatcgtt |
22063100 |
T |
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| Q |
143 |
ggttcatgcaatagattactctgctt |
168 |
Q |
| |
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||||| |||||| |||| || ||||| |
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| T |
22063101 |
ggttcctgcaatggattgctttgctt |
22063126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 20375197 - 20375133
Alignment:
| Q |
51 |
tttttcgtttgctccagaaccctccaatcattaccaatcttccagaagatcctaaccatcaactt |
115 |
Q |
| |
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|||||||||||| || ||||||||||||||| ||||||||||||||||||| || |||||||| |
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| T |
20375197 |
tttttcgtttgcatcaaaaccctccaatcattttcaatcttccagaagatccttactatcaactt |
20375133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 22069470 - 22069530
Alignment:
| Q |
43 |
cttcactgtttttcgtttgctccagaaccctccaatcattaccaatcttccagaagatcct |
103 |
Q |
| |
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|||||| ||||| ||||||||| |||||||||||||||||| |||||||||| ||||||| |
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| T |
22069470 |
cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatcct |
22069530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 6865499 - 6865439
Alignment:
| Q |
43 |
cttcactgtttttcgtttgctccagaaccctccaatcattaccaatcttccagaagatcct |
103 |
Q |
| |
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|||||||||| |||||||||| || ||||||||||||||| ||||||||| | ||||||| |
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| T |
6865499 |
cttcactgttcttcgtttgcttgagtaccctccaatcattatcaatcttcctggagatcct |
6865439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 20351463 - 20351523
Alignment:
| Q |
43 |
cttcactgtttttcgtttgctccagaaccctccaatcattaccaatcttccagaagatcct |
103 |
Q |
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|||||| |||||||||||||| || | ||||||| |||| ||||||||||||||||||| |
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| T |
20351463 |
cttcacagtttttcgtttgctacaagatcctccaagcattttcaatcttccagaagatcct |
20351523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 15960578 - 15960638
Alignment:
| Q |
43 |
cttcactgtttttcgtttgctccagaaccctccaatcattaccaatcttccagaagatcct |
103 |
Q |
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|||||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||| |
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| T |
15960578 |
cttcacagtttttcgtttgctcgaaaaccctccaatcatttttaatcttcccaaagatcct |
15960638 |
T |
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