View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_124 (Length: 244)
Name: NF3223_high_124
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_124 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 27312287 - 27312509
Alignment:
| Q |
8 |
gcaggggttccacaaagagtatgtagcaatccatcggatcggatctgatttgtgactgcacttaacccgaaatccgaaacttttaaattcccattttcat |
107 |
Q |
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| T |
27312287 |
gcaggggttccacaaagagtatgaagcaatccatcggatcggatctgatttgtgactgcacttaacccgaaatccgaaacttttaaattcccattttcat |
27312386 |
T |
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| Q |
108 |
ctaataacaaattctccggcttaagatcccgatgaaaaacccctcgtgaatgacaataaccaacagccgagattaattgatgaaaatatctccggctaag |
207 |
Q |
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| T |
27312387 |
ctaataacaaattctccggcttaagatcccgatgaaaaacccctcgtgaatgacaataaccaacagccgagattaattgatgaaaatatctccggctaag |
27312486 |
T |
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| Q |
208 |
atcttcgctaaacctaccctttg |
230 |
Q |
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| T |
27312487 |
atcttcgctaaacctaccctttg |
27312509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 27278843 - 27278800
Alignment:
| Q |
65 |
gcacttaacccgaaatccgaaacttttaaattcccattttcatc |
108 |
Q |
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||||||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
27278843 |
gcacttaacccgaaatcagaaacctttagattcccattttcatc |
27278800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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