View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3223_high_125 (Length: 243)
Name: NF3223_high_125
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3223_high_125 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 82 - 243
Target Start/End: Original strand, 36399677 - 36399837
Alignment:
| Q |
82 |
tcacgaacaatgtagcctattaataagcacccactaaccatacatgggcagtttgtattgaatnnnnnnnttactctacagaaagtcatgtatgcttgtg |
181 |
Q |
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| T |
36399677 |
tcacgaacaatgtagactattaataagcacccactaaccatacatgg-cagtttgtattgaataaaaaaattactctacagaaagtcatgtatgcttgtg |
36399775 |
T |
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| Q |
182 |
aactattcgctatacattatgtcgcgagaaccaatatttcccttttctttatccgcaagttt |
243 |
Q |
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| T |
36399776 |
aactattcgctatacattatgtcgcgagaaccaatatttcccttttttttatccgcaagttt |
36399837 |
T |
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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 11226045 - 11225917
Alignment:
| Q |
95 |
agcctattaataagcacccactaaccatacatgggcagtttgtattgaatnnnnnnnttactctacagaaagtcatgtatgcttgtgaactattcgctat |
194 |
Q |
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| T |
11226045 |
agcctattaacaagggcccactaaccatacatgggcagtttgtattgaataaaaaaattactgttcagtaagctacgtatgctcgtgaactattcactat |
11225946 |
T |
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| Q |
195 |
acattatgtcgcgagaaccaatatttccc |
223 |
Q |
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| T |
11225945 |
acattatgccgcgagaaccagcatttccc |
11225917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 47742983 - 47743102
Alignment:
| Q |
95 |
agcctattaataagcacccactaaccatacatgggcagtttgtattgaatnnnnnnnttactctacagaaagtcatgtatgcttgtgaactattcgctat |
194 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| | ||| ||| | ||||||| ||||||||||| |||| |
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| T |
47742983 |
agcctattaacaagggcccactaaccatacatgggcagtttgtattgaataaaaaaattactgttcagtaagctacgtatgctcgtgaactattcactat |
47743082 |
T |
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| Q |
195 |
acattatgtcgcgagaacca |
214 |
Q |
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| T |
47743083 |
acattatgacgcgagaacca |
47743102 |
T |
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