View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3223_high_127 (Length: 241)

Name: NF3223_high_127
Description: NF3223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3223_high_127
NF3223_high_127
[»] chr5 (1 HSPs)
chr5 (3-45)||(13710395-13710439)
[»] chr6 (1 HSPs)
chr6 (3-32)||(29419892-29419921)
[»] chr3 (1 HSPs)
chr3 (3-31)||(35511876-35511904)
[»] chr2 (1 HSPs)
chr2 (178-233)||(13537200-13537256)


Alignment Details
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 13710395 - 13710439
Alignment:
Q  3 aaaatgttgatttttacttataataatgatcag--ggtgtatatt 45  Q
    |||||||||||||||||||||||||||||||||  ||||||||||    
T  13710395 aaaatgttgatttttacttataataatgatcagatggtgtatatt 13710439  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 29419892 - 29419921
Alignment:
Q  3 aaaatgttgatttttacttataataatgat 32  Q
    ||||||||||||||||||||||||||||||    
T  29419892 aaaatgttgatttttacttataataatgat 29419921  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 35511876 - 35511904
Alignment:
Q  3 aaaatgttgatttttacttataataatga 31  Q
    |||||||||||||||||||||||||||||    
T  35511876 aaaatgttgatttttacttataataatga 35511904  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 13537256 - 13537200
Alignment:
Q  178 tgatagttcaaattattttaactaaattt-agtgttaatttaatcattcatctcatt 233  Q
    ||||| || |||| ||||||||||||||| ||||||||||| ||||||||| |||||    
T  13537256 tgatatttgaaatgattttaactaaattttagtgttaatttgatcattcatttcatt 13537200  T

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